Variant report

Variant	rs72639052
Chromosome Location	chr8:49426480-49426481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49425248..49427508-chr8:49492195..49495159,2	MCF-7	breast:
3	chr8:49418954..49422550-chr8:49424056..49426532,3	MCF-7	breast:
4	chr20:48599651..48600256-chr8:49426175..49427172,2	Hela-S3	cervix:
5	chr8:49420032..49424376-chr8:49425636..49428777,6	MCF-7	breast:
6	chr8:49426044..49428743-chr8:49433288..49436593,3	K562	blood:
7	chr8:49425428..49427661-chr8:49529540..49532467,2	MCF-7	breast:
8	chr8:49425401..49427959-chr8:49613311..49616115,2	K562	blood:
9	chr8:49425999..49428743-chr8:49432404..49436593,3	K562	blood:
10	chr8:49426158..49428177-chr8:49440459..49442488,2	MCF-7	breast:
11	chr8:49416623..49418414-chr8:49426088..49428237,3	MCF-7	breast:
12	chr8:49426108..49428162-chr8:49531601..49534476,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253702	Chromatin interaction
ENSG00000253455	Chromatin interaction

rs_ID	r²[population]
rs55811450	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs55847910	0.84[AMR][1000 genomes]
rs55864946	0.84[AMR][1000 genomes]
rs55914945	0.82[AMR][1000 genomes]
rs55927958	0.84[AMR][1000 genomes]
rs56348830	0.82[AMR][1000 genomes]
rs58223461	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6989759	0.84[AMR][1000 genomes]
rs72637690	0.81[AMR][1000 genomes]
rs72637691	0.81[AMR][1000 genomes]
rs72637696	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72637697	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72637700	0.84[AMR][1000 genomes]
rs72639004	0.81[AMR][1000 genomes]
rs72639010	0.84[AMR][1000 genomes]
rs72639011	0.84[AMR][1000 genomes]
rs72639012	0.84[AMR][1000 genomes]
rs72639013	0.84[AMR][1000 genomes]
rs72639016	0.84[AMR][1000 genomes]
rs72639020	0.84[AMR][1000 genomes]
rs72639047	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72639057	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72639068	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72639070	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49414600-49427000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:49422800-49426800	Weak transcription	Fetal Kidney	kidney
3	chr8:49423200-49426600	Weak transcription	Adipose Nuclei	Adipose
4	chr8:49423400-49426600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:49423400-49426600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:49423600-49426800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:49425000-49427200	Weak transcription	Gastric	stomach
8	chr8:49425800-49426800	Enhancers	Fetal Heart	heart
9	chr8:49426000-49426800	Enhancers	Fetal Lung	lung
10	chr8:49426000-49426800	Enhancers	HMEC	breast
11	chr8:49426200-49426600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:49426200-49426600	Enhancers	Aorta	Aorta
13	chr8:49426200-49426600	Enhancers	Fetal Muscle Trunk	muscle
14	chr8:49426200-49426600	Enhancers	Stomach Smooth Muscle	stomach
15	chr8:49426200-49426800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:49426200-49426800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:49426200-49426800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:49426200-49426800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr8:49426200-49426800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:49426200-49426800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr8:49426200-49426800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:49426200-49426800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr8:49426200-49426800	Enhancers	Fetal Muscle Leg	muscle
24	chr8:49426200-49427000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr8:49426200-49427000	Flanking Active TSS	NH-A	brain
26	chr8:49426200-49427600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr8:49426400-49426600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:49426400-49426600	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr8:49426400-49426600	Enhancers	Primary T cells fromperipheralblood	blood
30	chr8:49426400-49426600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr8:49426400-49426600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:49426400-49426600	Enhancers	Brain Anterior Caudate	brain
33	chr8:49426400-49426600	Enhancers	Brain Hippocampus Middle	brain
34	chr8:49426400-49426600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr8:49426400-49426600	Enhancers	Brain Substantia Nigra	brain
36	chr8:49426400-49426600	Enhancers	Duodenum Mucosa	Duodenum
37	chr8:49426400-49426600	Enhancers	Fetal Brain Female	brain
38	chr8:49426400-49426600	Enhancers	Fetal Intestine Small	intestine
39	chr8:49426400-49426600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr8:49426400-49426600	Enhancers	Small Intestine	intestine
41	chr8:49426400-49426600	Enhancers	Dnd41	blood
42	chr8:49426400-49426600	Enhancers	K562	blood
43	chr8:49426400-49426800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr8:49426400-49426800	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr8:49426400-49426800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr8:49426400-49426800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr8:49426400-49426800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:49426400-49426800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:49426400-49426800	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr8:49426400-49426800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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