Variant report

Variant	rs72637690
Chromosome Location	chr8:49285892-49285893
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs55656120	0.81[ASN][1000 genomes]
rs55811450	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55847910	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55864946	0.85[AMR][1000 genomes]
rs55898556	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55902055	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55914945	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs55927958	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55962116	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56054674	0.81[ASN][1000 genomes]
rs56057107	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56080763	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56152712	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56250422	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56322760	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56348830	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58223461	0.81[AMR][1000 genomes]
rs58429544	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58735618	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6989759	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72635698	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72635699	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72635700	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72635702	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637612	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72637676	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72637687	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72637688	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72637691	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72637696	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637697	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72637700	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72639004	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639005	0.84[ASN][1000 genomes]
rs72639010	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639011	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639012	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639013	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639016	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639020	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72639024	0.81[ASN][1000 genomes]
rs72639025	0.81[ASN][1000 genomes]
rs72639027	0.81[ASN][1000 genomes]
rs72639052	0.81[AMR][1000 genomes]
rs72639070	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49282600-49286600	Enhancers	Stomach Mucosa	stomach
2	chr8:49282800-49286800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:49282800-49286800	Enhancers	Placenta	Placenta
4	chr8:49282800-49287000	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:49283400-49286200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:49283400-49288600	Weak transcription	NH-A	brain
7	chr8:49284000-49286400	Enhancers	Gastric	stomach
8	chr8:49284200-49291000	Weak transcription	Fetal Intestine Small	intestine
9	chr8:49284200-49291400	Weak transcription	Fetal Kidney	kidney
10	chr8:49284400-49289200	Weak transcription	Fetal Stomach	stomach
11	chr8:49284800-49286000	Weak transcription	Lung	lung
12	chr8:49284800-49288000	Weak transcription	NHLF	lung
13	chr8:49284800-49288600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:49284800-49289000	Weak transcription	HSMM	muscle
15	chr8:49285000-49286000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:49285000-49286600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:49285000-49289800	Weak transcription	Fetal Lung	lung
18	chr8:49285600-49286400	Enhancers	Muscle Satellite Cultured Cells	--
19	chr8:49285600-49286600	Enhancers	Osteobl	bone
20	chr8:49285600-49286800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:49285600-49287000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:49285600-49287200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:49285600-49290000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:49285600-49292400	Enhancers	NHDF-Ad	bronchial
25	chr8:49285800-49286200	Weak transcription	HSMMtube	muscle
26	chr8:49285800-49286600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:49285800-49288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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