Variant report

Variant	rs56054674
Chromosome Location	chr8:49348188-49348189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49347064..49348779-chr8:49356019..49358997,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1123189	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937171	0.87[EUR][1000 genomes]
rs55656120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55811450	0.88[AMR][1000 genomes]
rs55847910	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55864946	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55914945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55927958	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56308602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56348830	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989759	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72637690	0.81[ASN][1000 genomes]
rs72637691	0.83[AFR][1000 genomes]
rs72637696	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637697	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72639004	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639005	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639010	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639011	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639012	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639013	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639016	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639020	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639023	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639024	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639025	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639027	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639047	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs907176	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49345000-49352400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:49345600-49349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:49345600-49350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49345600-49350800	Weak transcription	Ovary	ovary
6	chr8:49345600-49351200	Weak transcription	Spleen	Spleen
7	chr8:49345800-49351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:49346200-49350400	Weak transcription	Aorta	Aorta
9	chr8:49346400-49349400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:49346400-49349600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:49346400-49350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:49346400-49352400	Weak transcription	Adipose Nuclei	Adipose
13	chr8:49346800-49351200	Weak transcription	Fetal Lung	lung
14	chr8:49347000-49350800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:49347200-49348200	ZNF genes & repeats	Fetal Stomach	stomach
16	chr8:49347200-49351200	Weak transcription	Lung	lung
17	chr8:49347400-49351400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:49347600-49349600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr8:49347800-49352400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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