Variant report

Variant	rs72639011
Chromosome Location	chr8:49332315-49332316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49331272..49334248-chr8:49353001..49355227,2	MCF-7	breast:
2	chr8:49332040..49335139-chr8:49335695..49338552,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1123189	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16937171	0.82[EUR][1000 genomes]
rs55656120	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55811450	0.94[AMR][1000 genomes]
rs55847910	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55864946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55898556	0.82[AMR][1000 genomes]
rs55914945	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55927958	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962116	0.82[AMR][1000 genomes]
rs56054674	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56152712	0.82[AMR][1000 genomes]
rs56308602	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56348830	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58223461	0.84[AMR][1000 genomes]
rs6471752	0.83[EUR][1000 genomes]
rs6989759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72637612	0.82[AMR][1000 genomes]
rs72637676	0.82[AMR][1000 genomes]
rs72637687	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637688	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637690	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637691	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72637696	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72637697	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639004	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639005	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639013	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639020	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639023	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639024	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639025	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639027	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639028	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639030	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639032	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639047	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72639052	0.84[AMR][1000 genomes]
rs72639068	0.81[AMR][1000 genomes]
rs72639070	0.84[AMR][1000 genomes]
rs907176	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49319800-49332400	Weak transcription	Fetal Kidney	kidney
2	chr8:49329800-49332400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:49330000-49333800	Enhancers	HUVEC	blood vessel
4	chr8:49330200-49334200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr8:49330600-49332800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr8:49330600-49334400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:49331000-49332400	Enhancers	Fetal Muscle Leg	muscle
8	chr8:49331000-49332600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:49331000-49332600	Enhancers	Adipose Nuclei	Adipose
10	chr8:49331000-49332600	Enhancers	Right Ventricle	heart
11	chr8:49331000-49332800	Enhancers	Spleen	Spleen
12	chr8:49331000-49333000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:49331000-49333000	Enhancers	Left Ventricle	heart
14	chr8:49331000-49333400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:49331000-49333800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:49331000-49333800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:49331000-49333800	Enhancers	NHEK	skin
18	chr8:49331000-49334000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr8:49331000-49334200	Enhancers	Osteobl	bone
20	chr8:49331000-49334600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:49331000-49334600	Enhancers	NHDF-Ad	bronchial
22	chr8:49331200-49332600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:49331200-49333000	Enhancers	Fetal Thymus	thymus
24	chr8:49331200-49334000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:49331200-49334200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:49331200-49334400	Enhancers	Fetal Lung	lung
27	chr8:49331200-49334800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr8:49331400-49333000	Enhancers	Lung	lung
29	chr8:49331600-49332400	Enhancers	Placenta	Placenta
30	chr8:49331600-49332600	Enhancers	NH-A	brain
31	chr8:49331600-49333000	Enhancers	Fetal Muscle Trunk	muscle
32	chr8:49331600-49333800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:49331600-49334000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr8:49331600-49334000	Enhancers	HMEC	breast
35	chr8:49331600-49334400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:49331800-49332600	Enhancers	Gastric	stomach
37	chr8:49331800-49333000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:49331800-49333600	Weak transcription	Right Atrium	heart
39	chr8:49332000-49333800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr8:49332200-49332400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr8:49332200-49332400	Enhancers	Fetal Intestine Small	intestine
42	chr8:49332200-49332800	Flanking Active TSS	NHLF	lung
43	chr8:49332200-49333000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr8:49332200-49333000	Flanking Active TSS	HSMM	muscle
45	chr8:49332200-49335000	Weak transcription	Fetal Stomach	stomach

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