Variant report

Variant	rs55898556
Chromosome Location	chr8:49255593-49255594
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17622439	0.95[ASN][1000 genomes]
rs55811450	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55847910	0.82[AMR][1000 genomes]
rs55864946	0.82[AMR][1000 genomes]
rs55902055	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55927958	0.82[AMR][1000 genomes]
rs55962116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56057107	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080763	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56152712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56250422	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56322760	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58429544	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58735618	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989759	0.82[AMR][1000 genomes]
rs72635698	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72635699	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72635700	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72635702	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72637612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72637676	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72637687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72637688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72637690	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72637691	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637696	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637697	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72637700	0.82[AMR][1000 genomes]
rs72639010	0.82[AMR][1000 genomes]
rs72639011	0.82[AMR][1000 genomes]
rs72639012	0.82[AMR][1000 genomes]
rs72639013	0.82[AMR][1000 genomes]
rs72639016	0.82[AMR][1000 genomes]
rs72639020	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831310	chr8:49080177-49256440	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831311	chr8:49106160-49290209	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49254400-49255600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:49254400-49255600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:49254800-49255600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:49254800-49255600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr8:49254800-49255800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:49255000-49255800	Enhancers	HUES6 Cell Line	embryonic stem cell

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