Variant report

Variant	rs55927958
Chromosome Location	chr8:49335274-49335275
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1123189	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16937171	0.82[EUR][1000 genomes]
rs55656120	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55811450	0.94[AMR][1000 genomes]
rs55847910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55864946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55898556	0.82[AMR][1000 genomes]
rs55914945	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55962116	0.82[AMR][1000 genomes]
rs56054674	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56152712	0.82[AMR][1000 genomes]
rs56308602	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56348830	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58223461	0.84[AMR][1000 genomes]
rs6471752	0.83[EUR][1000 genomes]
rs6989759	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72637612	0.82[AMR][1000 genomes]
rs72637676	0.82[AMR][1000 genomes]
rs72637687	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637688	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72637690	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637691	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72637696	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72637697	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639004	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639005	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639010	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639011	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639012	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639016	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639023	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639025	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639027	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639028	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639030	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639032	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639047	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72639052	0.84[AMR][1000 genomes]
rs72639068	0.81[AMR][1000 genomes]
rs72639070	0.84[AMR][1000 genomes]
rs907176	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49332400-49340200	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49332800-49338600	Weak transcription	Spleen	Spleen
3	chr8:49333400-49339800	Weak transcription	Pancreas	Pancrea
4	chr8:49333800-49341400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49334000-49339800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr8:49334200-49339800	Weak transcription	Right Atrium	heart
7	chr8:49334400-49339200	Weak transcription	Fetal Brain Female	brain
8	chr8:49334400-49339800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:49334400-49339800	Weak transcription	Fetal Lung	lung
10	chr8:49334600-49339400	Weak transcription	NHDF-Ad	bronchial
11	chr8:49334600-49339800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:49334600-49339800	Weak transcription	NHLF	lung
13	chr8:49335000-49335800	ZNF genes & repeats	Fetal Stomach	stomach
14	chr8:49335000-49339200	Weak transcription	Fetal Brain Male	brain
15	chr8:49335200-49339200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:49335200-49340200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:49335200-49340200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:49335200-49340200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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