Variant report

Variant	rs55914945
Chromosome Location	chr8:49342959-49342960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
2	chr8:49339618..49341407-chr8:49342109..49344898,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EFCAB1-7	chr8:49340703-49343219	NONHSAT126478
2	lnc-EFCAB1-7	chr8:49342693-49343386	NONHSAT126479

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1123189	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937171	0.83[EUR][1000 genomes]
rs55656120	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55811450	0.91[AMR][1000 genomes]
rs55847910	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55864946	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55927958	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56054674	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308602	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56348830	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58223461	0.82[AMR][1000 genomes]
rs6471752	0.82[EUR][1000 genomes]
rs6989759	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72637690	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72637691	0.82[AMR][1000 genomes]
rs72637696	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637697	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637700	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72639004	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639005	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639010	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639011	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639013	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639016	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639020	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639023	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639024	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639025	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639027	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639028	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639030	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639032	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639047	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72639052	0.82[AMR][1000 genomes]
rs72639070	0.82[AMR][1000 genomes]
rs907176	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49339800-49344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49340000-49343000	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:49340000-49343000	Enhancers	HSMM	muscle
6	chr8:49340000-49343200	Enhancers	Ovary	ovary
7	chr8:49340000-49343400	Enhancers	Colonic Mucosa	Colon
8	chr8:49340000-49345000	Enhancers	Brain Cingulate Gyrus	brain
9	chr8:49340000-49345000	Enhancers	Placenta	Placenta
10	chr8:49340200-49343000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:49340200-49343200	Enhancers	NH-A	brain
12	chr8:49340200-49343600	Enhancers	Fetal Heart	heart
13	chr8:49340200-49344200	Enhancers	Fetal Intestine Large	intestine
14	chr8:49340200-49344400	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr8:49340200-49344600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:49340200-49345000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:49340400-49345000	Enhancers	Duodenum Mucosa	Duodenum
18	chr8:49340600-49344000	Weak transcription	Aorta	Aorta
19	chr8:49340600-49344800	Enhancers	Fetal Stomach	stomach
20	chr8:49340800-49344400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr8:49341200-49343000	Enhancers	Fetal Kidney	kidney
22	chr8:49341200-49343000	Enhancers	Left Ventricle	heart
23	chr8:49341200-49343000	Enhancers	Lung	lung
24	chr8:49341200-49343200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr8:49341200-49343800	Enhancers	H1 Cell Line	embryonic stem cell
26	chr8:49341200-49343800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:49341200-49343800	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:49341200-49344400	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr8:49341200-49346200	Enhancers	Right Atrium	heart
30	chr8:49341200-49346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:49341400-49343000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:49341400-49343800	Enhancers	Fetal Intestine Small	intestine
33	chr8:49341400-49344200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr8:49341400-49344200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr8:49341400-49344200	Enhancers	Colon Smooth Muscle	Colon
36	chr8:49341600-49343000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:49341600-49343400	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr8:49341600-49343800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr8:49341600-49344000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:49341600-49345000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:49341800-49343200	Weak transcription	Fetal Brain Female	brain
42	chr8:49341800-49343600	Weak transcription	Brain Angular Gyrus	brain
43	chr8:49341800-49343600	Weak transcription	Brain Substantia Nigra	brain
44	chr8:49342000-49343800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:49342200-49343200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr8:49342200-49343200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr8:49342200-49343800	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr8:49342400-49343000	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr8:49342400-49343000	Enhancers	Primary hematopoietic stem cells	blood
50	chr8:49342400-49343000	Weak transcription	Rectal Mucosa Donor 29	rectum

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