Variant report

Variant	rs72639025
Chromosome Location	chr8:49344134-49344135
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
2	chr8:49339618..49341407-chr8:49342109..49344898,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1123189	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937171	0.87[EUR][1000 genomes]
rs55656120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55811450	0.88[AMR][1000 genomes]
rs55847910	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55864946	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55914945	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55927958	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56054674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56308602	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56348830	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989759	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72637690	0.81[ASN][1000 genomes]
rs72637696	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637697	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72639004	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639005	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639010	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639011	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639012	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639013	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639016	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639020	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639028	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639030	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639032	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72639047	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs907176	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49339800-49344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49340000-49345000	Enhancers	Brain Cingulate Gyrus	brain
5	chr8:49340000-49345000	Enhancers	Placenta	Placenta
6	chr8:49340200-49344200	Enhancers	Fetal Intestine Large	intestine
7	chr8:49340200-49344400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:49340200-49344600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:49340200-49345000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:49340400-49345000	Enhancers	Duodenum Mucosa	Duodenum
11	chr8:49340600-49344800	Enhancers	Fetal Stomach	stomach
12	chr8:49340800-49344400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:49341200-49344400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:49341200-49346200	Enhancers	Right Atrium	heart
15	chr8:49341200-49346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:49341400-49344200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:49341400-49344200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr8:49341400-49344200	Enhancers	Colon Smooth Muscle	Colon
19	chr8:49341600-49345000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr8:49342400-49344200	Weak transcription	Psoas Muscle	Psoas
21	chr8:49342600-49344200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:49342600-49344200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
23	chr8:49342600-49344200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:49342600-49344400	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr8:49342600-49344400	Flanking Active TSS	NHDF-Ad	bronchial
26	chr8:49342600-49344400	Flanking Active TSS	Osteobl	bone
27	chr8:49342600-49345000	Enhancers	HMEC	breast
28	chr8:49343200-49344200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr8:49343200-49344200	Weak transcription	HSMMtube	muscle
30	chr8:49343200-49344600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:49343200-49345000	Weak transcription	Esophagus	oesophagus
32	chr8:49343200-49347000	Enhancers	Fetal Muscle Trunk	muscle
33	chr8:49343400-49344200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:49343400-49344200	Enhancers	Fetal Kidney	kidney
35	chr8:49343400-49345000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:49343400-49345000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr8:49343400-49345000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr8:49343400-49345200	Enhancers	HSMM	muscle
39	chr8:49343400-49345600	Enhancers	Left Ventricle	heart
40	chr8:49343400-49346400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr8:49343400-49346400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:49343400-49347200	Enhancers	Lung	lung
43	chr8:49343600-49344200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr8:49343600-49344600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr8:49343600-49345000	Enhancers	Brain Angular Gyrus	brain
46	chr8:49343600-49345400	Enhancers	NH-A	brain
47	chr8:49343600-49346200	Enhancers	Brain Substantia Nigra	brain
48	chr8:49343800-49344200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr8:49343800-49344200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr8:49343800-49344200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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