Variant report

Variant	rs72639005
Chromosome Location	chr8:49321961-49321962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49317133..49318698-chr8:49321145..49323341,2	K562	blood:
2	chr8:49282537..49285515-chr8:49321779..49323714,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1123189	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16937171	0.82[EUR][1000 genomes]
rs55656120	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55811450	0.82[AMR][1000 genomes]
rs55847910	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55864946	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55914945	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55927958	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054674	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56308602	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56348830	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6471752	0.83[EUR][1000 genomes]
rs6989759	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72637687	0.82[ASN][1000 genomes]
rs72637688	0.82[ASN][1000 genomes]
rs72637690	0.84[ASN][1000 genomes]
rs72637691	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72637696	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72637697	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs72637700	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639004	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639010	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639011	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639012	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639013	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639016	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639020	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639023	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639024	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639025	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639027	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639028	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639030	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639032	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639047	0.83[EUR][1000 genomes]
rs907176	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49315400-49322200	Weak transcription	Ovary	ovary
2	chr8:49318600-49322000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:49318600-49322400	Enhancers	Fetal Muscle Leg	muscle
4	chr8:49318600-49322600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:49318800-49322400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:49318800-49322800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr8:49318800-49323000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:49318800-49323000	Enhancers	NHLF	lung
9	chr8:49318800-49323200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:49319400-49322400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:49319400-49322800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:49319400-49322800	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr8:49319400-49323000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:49319800-49332400	Weak transcription	Fetal Kidney	kidney
15	chr8:49320000-49322000	Enhancers	Fetal Stomach	stomach
16	chr8:49320000-49322600	Enhancers	Esophagus	oesophagus
17	chr8:49320000-49322800	Enhancers	Hela-S3	cervix
18	chr8:49320200-49322400	Enhancers	Aorta	Aorta
19	chr8:49320600-49322000	Flanking Active TSS	Osteobl	bone
20	chr8:49320600-49322400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr8:49320600-49322600	Flanking Active TSS	HSMM	muscle
22	chr8:49321000-49323400	Enhancers	HMEC	breast
23	chr8:49321200-49322400	Enhancers	Fetal Lung	lung
24	chr8:49321400-49322000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:49321400-49322000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:49321400-49322000	Enhancers	HUVEC	blood vessel
27	chr8:49321400-49322000	Flanking Active TSS	NHDF-Ad	bronchial
28	chr8:49321400-49322600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:49321400-49322600	Enhancers	Pancreas	Pancrea
30	chr8:49321400-49322800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:49321400-49322800	Flanking Active TSS	NH-A	brain
32	chr8:49321600-49323200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:49321800-49322200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:49321800-49322200	Enhancers	NHEK	skin
35	chr8:49321800-49322400	Enhancers	A549	lung
36	chr8:49321800-49322600	Enhancers	Stomach Mucosa	stomach
37	chr8:49321800-49322800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:49321800-49323400	Enhancers	HSMMtube	muscle

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