Variant report

Variant	rs7013462
Chromosome Location	chr8:49385585-49385586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49379288..49382130-chr8:49385329..49388085,3	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10087276	0.80[AMR][1000 genomes]
rs10089933	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10091807	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10094801	0.84[JPT][hapmap]
rs10096760	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10096946	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10104817	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10107213	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10108258	0.83[EUR][1000 genomes]
rs10282826	0.82[EUR][1000 genomes]
rs10957084	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11989167	0.83[EUR][1000 genomes]
rs11990598	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12386841	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13263338	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13265552	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13281995	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1510931	0.83[EUR][1000 genomes]
rs16936986	0.83[EUR][1000 genomes]
rs1910251	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2200084	0.83[JPT][hapmap]
rs2891637	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35023025	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5001149	0.84[JPT][hapmap]
rs6471766	0.81[EUR][1000 genomes]
rs6471788	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6471906	0.83[JPT][hapmap]
rs68052435	0.83[EUR][1000 genomes]
rs6980967	0.83[EUR][1000 genomes]
rs6983687	0.83[EUR][1000 genomes]
rs6984699	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6988484	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6990833	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6993458	0.87[EUR][1000 genomes]
rs7000226	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7012665	0.95[CEU][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7014106	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017438	0.83[EUR][1000 genomes]
rs7818323	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7827432	0.83[EUR][1000 genomes]
rs7830050	0.87[EUR][1000 genomes]
rs7838570	0.83[EUR][1000 genomes]
rs868444	0.84[JPT][hapmap]
rs871920	0.81[EUR][1000 genomes]
rs9298007	0.90[EUR][1000 genomes]
rs937651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs949635	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs955819	0.80[EUR][1000 genomes]
rs9987211	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49380200-49390400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49380400-49385600	Weak transcription	Placenta	Placenta
3	chr8:49380800-49386400	Weak transcription	Fetal Muscle Leg	muscle
4	chr8:49380800-49386400	Weak transcription	Pancreas	Pancrea
5	chr8:49382200-49387200	Enhancers	HMEC	breast
6	chr8:49383000-49386800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:49383400-49386800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:49383400-49387000	Enhancers	NHDF-Ad	bronchial
9	chr8:49383600-49386800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:49383800-49386000	Weak transcription	NHLF	lung
11	chr8:49384000-49385800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:49384200-49386000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:49384600-49385800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:49384600-49385800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:49384600-49386000	Weak transcription	Osteobl	bone
16	chr8:49384600-49386200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:49384600-49386400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:49384600-49386800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:49384600-49387600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr8:49384800-49385800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:49384800-49385800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr8:49385000-49385600	Enhancers	K562	blood
23	chr8:49385000-49386000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr8:49385000-49386000	Weak transcription	HSMM	muscle
25	chr8:49385200-49386400	Weak transcription	NH-A	brain
26	chr8:49385200-49386400	Weak transcription	NHEK	skin
27	chr8:49385400-49386400	Weak transcription	Placenta Amnion	Placenta Amnion

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