Variant report

Variant	rs11990598
Chromosome Location	chr8:49389493-49389494
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10087276	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10089933	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091807	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10094801	0.83[JPT][hapmap]
rs10096760	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10096946	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10104817	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10107213	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10108258	0.80[EUR][1000 genomes]
rs10957084	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11989167	0.80[EUR][1000 genomes]
rs12386841	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13263338	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13265552	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13281995	0.92[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1510931	0.80[EUR][1000 genomes]
rs16936986	0.80[EUR][1000 genomes]
rs1910251	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2200084	0.83[JPT][hapmap]
rs2891637	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35023025	0.90[ASN][1000 genomes]
rs5001149	0.83[JPT][hapmap]
rs6471788	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6471906	0.83[JPT][hapmap]
rs68052435	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6980967	0.80[EUR][1000 genomes]
rs6983687	0.80[EUR][1000 genomes]
rs6984699	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6988484	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6990833	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6993458	0.85[EUR][1000 genomes]
rs7000226	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7012665	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7013462	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7014106	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7017438	0.80[EUR][1000 genomes]
rs7818323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7827432	0.80[EUR][1000 genomes]
rs7830050	0.85[EUR][1000 genomes]
rs7838570	0.80[EUR][1000 genomes]
rs868444	0.83[JPT][hapmap]
rs9298007	0.88[EUR][1000 genomes]
rs937651	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949635	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9987211	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49380200-49390400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49386800-49390200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:49386800-49390800	Weak transcription	NHLF	lung
4	chr8:49386800-49391400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:49386800-49394600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:49387000-49390200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:49388200-49390600	Enhancers	Fetal Muscle Trunk	muscle
8	chr8:49389000-49391600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:49389200-49389600	Enhancers	Adipose Nuclei	Adipose

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