Variant report

Variant	rs6988484
Chromosome Location	chr8:49413780-49413781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49404924..49406678-chr8:49413154..49415033,2	MCF-7	breast:
2	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10087276	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10089933	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10091807	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094801	0.84[JPT][hapmap]
rs10096760	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10104817	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10107213	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957084	0.83[EUR][1000 genomes]
rs11990598	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12386841	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13263338	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13265552	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13281995	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1910251	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2200084	0.83[JPT][hapmap]
rs2891637	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35023025	0.90[ASN][1000 genomes]
rs5001149	0.84[JPT][hapmap]
rs6471788	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6471906	0.83[JPT][hapmap]
rs6984699	0.83[EUR][1000 genomes]
rs6990833	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6993458	0.83[EUR][1000 genomes]
rs7000226	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7012665	0.95[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7013462	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7014106	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7818323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7830050	0.83[EUR][1000 genomes]
rs868444	0.84[JPT][hapmap]
rs9298007	0.87[EUR][1000 genomes]
rs937651	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs949635	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9987211	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49407000-49413800	Weak transcription	NH-A	brain
2	chr8:49412800-49414600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:49413000-49414600	Enhancers	HMEC	breast
4	chr8:49413000-49415400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:49413200-49414000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:49413200-49414200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:49413200-49414400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:49413200-49415600	Enhancers	NHDF-Ad	bronchial
9	chr8:49413200-49415800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:49413400-49413800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:49413400-49413800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:49413400-49413800	Enhancers	NHEK	skin
13	chr8:49413400-49414000	Enhancers	A549	lung
14	chr8:49413400-49414200	Enhancers	Adipose Nuclei	Adipose
15	chr8:49413400-49414200	Enhancers	Brain Anterior Caudate	brain
16	chr8:49413400-49414400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:49413400-49414400	Enhancers	Aorta	Aorta
18	chr8:49413400-49414400	Enhancers	Fetal Muscle Trunk	muscle
19	chr8:49413400-49414400	Enhancers	Pancreas	Pancrea
20	chr8:49413400-49414600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49413400-49414600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:49413400-49414600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:49413400-49414600	Enhancers	Esophagus	oesophagus
24	chr8:49413400-49414600	Enhancers	Fetal Muscle Leg	muscle
25	chr8:49413400-49414600	Enhancers	NHLF	lung
26	chr8:49413400-49414800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr8:49413400-49415600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:49413400-49415600	Enhancers	Osteobl	bone
29	chr8:49413400-49416800	Enhancers	Fetal Lung	lung
30	chr8:49413600-49413800	Enhancers	Hela-S3	cervix
31	chr8:49413600-49414200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr8:49413600-49418800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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