Variant report

Variant	rs7000226
Chromosome Location	chr8:49483815-49483816
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49483172..49485493-chr8:49490422..49492666,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10087276	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10087665	0.89[AFR][1000 genomes]
rs10089933	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10091807	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10094801	0.83[JPT][hapmap]
rs10104817	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10107213	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11990598	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12386841	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13263338	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13265552	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16937921	0.90[AFR][1000 genomes]
rs1910251	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2200084	0.82[JPT][hapmap]
rs2279300	0.83[CEU][hapmap]
rs2279301	0.83[CEU][hapmap]
rs2279302	0.83[CEU][hapmap]
rs28689821	0.86[AFR][1000 genomes]
rs2891637	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5001149	0.83[JPT][hapmap]
rs6471906	0.83[JPT][hapmap];0.82[YRI][hapmap]
rs6981394	0.92[AFR][1000 genomes]
rs6988484	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6990833	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7012665	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7013462	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7014106	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7818323	0.94[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs868444	0.83[JPT][hapmap]
rs937651	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49477400-49488800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:49477800-49486400	Weak transcription	Ovary	ovary
3	chr8:49481600-49484600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:49481800-49484000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:49482000-49488600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr8:49482200-49484000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:49482400-49484600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:49483000-49484000	Enhancers	NH-A	brain
9	chr8:49483000-49490600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:49483200-49484600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:49483400-49484000	Enhancers	Fetal Lung	lung
12	chr8:49483400-49484800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:49483400-49486000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:49483400-49491400	Weak transcription	NHDF-Ad	bronchial
15	chr8:49483600-49484600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:49483600-49484600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:49483600-49484600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:49483600-49486000	Weak transcription	NHLF	lung
19	chr8:49483600-49489400	Weak transcription	HMEC	breast
20	chr8:49483600-49491600	Weak transcription	HSMM	muscle
21	chr8:49483800-49484600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr8:49483800-49484800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:49483800-49486000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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