Variant report

Variant	rs16937767
Chromosome Location	chr8:49457532-49457533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49426903..49428543-chr8:49456209..49459000,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10087276	0.81[AMR][1000 genomes]
rs10087280	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10087665	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10092171	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10094801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10097989	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10098707	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10110147	0.86[EUR][1000 genomes]
rs10110839	0.86[EUR][1000 genomes]
rs10282993	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10957175	0.83[JPT][hapmap];0.84[MEX][hapmap]
rs1160606	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774421	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11985324	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11992271	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11995181	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11997525	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1393550	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16937564	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16937921	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16938118	0.83[JPT][hapmap];0.84[MEX][hapmap]
rs1910252	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1976450	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2200083	0.83[JPT][hapmap]
rs2200084	0.88[JPT][hapmap]
rs2384925	0.83[JPT][hapmap];0.84[MEX][hapmap]
rs28507516	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28689821	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2891639	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2891641	0.83[JPT][hapmap]
rs5001149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55851597	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57846507	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6981394	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6990833	0.83[ASW][hapmap];0.83[JPT][hapmap];0.80[YRI][hapmap]
rs6998738	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7012665	0.83[ASW][hapmap]
rs7016759	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72639043	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7817656	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7825135	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs868444	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs931764	0.86[EUR][1000 genomes]
rs970214	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49454200-49457600	Weak transcription	Spleen	Spleen
2	chr8:49454400-49457800	Enhancers	Fetal Lung	lung
3	chr8:49454400-49458000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:49454400-49458000	Enhancers	Fetal Stomach	stomach
5	chr8:49454400-49458400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:49454400-49458600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:49454400-49458600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:49454600-49457600	Enhancers	NHDF-Ad	bronchial
9	chr8:49454600-49457800	Enhancers	Fetal Muscle Leg	muscle
10	chr8:49454600-49458600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:49454600-49459000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:49455000-49457600	Enhancers	Adipose Nuclei	Adipose
13	chr8:49455000-49458400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:49455000-49458600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:49455200-49458000	Weak transcription	Colonic Mucosa	Colon
16	chr8:49455400-49457600	Weak transcription	Lung	lung
17	chr8:49455400-49458400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:49455400-49458600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr8:49455400-49460600	Weak transcription	HMEC	breast
20	chr8:49455400-49462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49455400-49462800	Weak transcription	Right Ventricle	heart
22	chr8:49455600-49458400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr8:49455800-49459000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr8:49455800-49467800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr8:49456200-49458600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:49456400-49457600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:49456400-49461800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:49456400-49463400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:49456600-49457600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr8:49456600-49458000	Enhancers	Ovary	ovary
31	chr8:49456600-49462800	Weak transcription	NHLF	lung
32	chr8:49456800-49457600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:49456800-49457600	Enhancers	Osteobl	bone
34	chr8:49457000-49457600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:49457000-49458600	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr8:49457000-49467000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr8:49457200-49457800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:49457200-49458400	Weak transcription	NH-A	brain
39	chr8:49457200-49458600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr8:49457200-49465400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr8:49457200-49466200	Weak transcription	Fetal Kidney	kidney
42	chr8:49457400-49457600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:49457400-49457600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:49457400-49457600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr8:49457400-49457600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr8:49457400-49457600	Enhancers	Gastric	stomach
47	chr8:49457400-49458000	Bivalent Enhancer	Placenta	Placenta
48	chr8:49457400-49458200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:49457400-49458400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr8:49457400-49458600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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