Variant report

Variant	rs1393550
Chromosome Location	chr8:49452997-49452998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10087276	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10087280	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10087665	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10092171	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10094801	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10097989	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10098707	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10110147	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10110839	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10112025	0.83[AFR][1000 genomes]
rs10113165	0.80[AFR][1000 genomes]
rs10282993	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10957175	0.83[JPT][hapmap];0.89[MEX][hapmap]
rs1160606	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11774421	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11985324	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11985893	0.83[AFR][1000 genomes]
rs11992271	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11995181	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11997525	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16937564	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16937767	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16937921	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16938118	0.83[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap]
rs1910252	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1976450	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2047787	0.81[AFR][1000 genomes]
rs2200083	0.83[JPT][hapmap]
rs2200084	0.88[JPT][hapmap]
rs2279300	0.80[MEX][hapmap]
rs2279301	0.80[MEX][hapmap]
rs2279302	0.80[MEX][hapmap]
rs2384925	0.83[JPT][hapmap];0.89[MEX][hapmap]
rs28507516	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28516085	0.83[AFR][1000 genomes]
rs28689821	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2891639	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2891641	0.83[JPT][hapmap]
rs4554493	0.83[AFR][1000 genomes]
rs5001149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55851597	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57846507	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6981394	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6990833	0.83[JPT][hapmap];0.85[MEX][hapmap]
rs6998738	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7006329	0.83[AFR][1000 genomes]
rs7012665	0.84[MEX][hapmap]
rs7016759	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72639043	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7817656	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7825135	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs868444	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs931764	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs970214	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49438600-49457400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49443000-49455200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:49443600-49454600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:49445600-49454800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:49445600-49455000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:49448600-49455200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:49448800-49454600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:49448800-49454600	Weak transcription	Ovary	ovary
9	chr8:49449000-49454400	Weak transcription	Fetal Stomach	stomach
10	chr8:49449400-49455000	Weak transcription	Adipose Nuclei	Adipose
11	chr8:49449800-49455400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:49450000-49455200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:49450200-49454400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:49450200-49454400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:49450200-49454600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:49450200-49454800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:49450200-49455000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:49450200-49455000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:49450200-49455000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:49450200-49455000	Weak transcription	HSMM	muscle
21	chr8:49450200-49455000	Weak transcription	NHLF	lung
22	chr8:49450400-49454600	Weak transcription	NHDF-Ad	bronchial
23	chr8:49450400-49455200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr8:49450600-49454400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr8:49450600-49454400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:49450600-49454800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:49450600-49454800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:49450600-49455000	Weak transcription	Osteobl	bone
29	chr8:49450600-49455400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:49450600-49455400	Weak transcription	Fetal Kidney	kidney
31	chr8:49450800-49453200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr8:49450800-49454400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr8:49451000-49454400	Weak transcription	Fetal Lung	lung
34	chr8:49451000-49454600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr8:49451000-49454600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr8:49451000-49455000	Weak transcription	NH-A	brain
37	chr8:49452800-49455200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:49452800-49457000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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