Variant report

Variant	rs6998738
Chromosome Location	chr8:49466050-49466051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49460732..49462666-chr8:49465978..49467644,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10087276	0.81[AMR][1000 genomes]
rs10087280	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10087665	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10092171	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10094801	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10097989	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10098707	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10110147	0.85[EUR][1000 genomes]
rs10110839	0.85[EUR][1000 genomes]
rs10282993	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1160606	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11774421	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11985324	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11992271	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11995181	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11997525	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1393550	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16937564	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16937767	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937921	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1910252	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1976450	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28507516	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28689821	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2891639	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5001149	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55851597	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57846507	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6981394	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016759	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72639043	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7817656	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7825135	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs868444	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs931764	0.85[EUR][1000 genomes]
rs970214	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49455800-49467800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr8:49457000-49467000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:49457200-49466200	Weak transcription	Fetal Kidney	kidney
4	chr8:49457600-49467400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49457600-49468600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:49458600-49466800	Weak transcription	Pancreas	Pancrea
7	chr8:49461800-49468000	Enhancers	Fetal Muscle Leg	muscle
8	chr8:49461800-49469000	Enhancers	Fetal Brain Male	brain
9	chr8:49462000-49468000	Enhancers	Ovary	ovary
10	chr8:49462600-49468200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr8:49462800-49467400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:49463600-49466800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:49463800-49466800	Weak transcription	Adipose Nuclei	Adipose
14	chr8:49463800-49466800	Weak transcription	Esophagus	oesophagus
15	chr8:49463800-49466800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr8:49463800-49467000	Weak transcription	Fetal Brain Female	brain
17	chr8:49463800-49467200	Weak transcription	Brain Germinal Matrix	brain
18	chr8:49463800-49468200	Weak transcription	Aorta	Aorta
19	chr8:49464000-49466400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:49464000-49466400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr8:49464000-49466400	Weak transcription	Right Atrium	heart
22	chr8:49464000-49466400	Weak transcription	NHLF	lung
23	chr8:49464000-49466800	Weak transcription	Left Ventricle	heart
24	chr8:49464000-49466800	Weak transcription	Right Ventricle	heart
25	chr8:49464000-49468600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr8:49464200-49466400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr8:49464200-49466400	Weak transcription	NHDF-Ad	bronchial
28	chr8:49464200-49466800	Weak transcription	NH-A	brain
29	chr8:49464400-49466200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:49464400-49466200	Weak transcription	HSMMtube	muscle
31	chr8:49464400-49466600	Weak transcription	Osteobl	bone
32	chr8:49464400-49466800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:49464400-49466800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:49464400-49466800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr8:49464400-49466800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr8:49464400-49466800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:49464400-49467800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr8:49464800-49467200	Enhancers	Placenta	Placenta
39	chr8:49465000-49466800	Enhancers	Fetal Lung	lung
40	chr8:49465200-49468400	Enhancers	Cortex derived primary cultured neurospheres	brain
41	chr8:49465400-49467000	Enhancers	Spleen	Spleen
42	chr8:49465400-49467800	Enhancers	Fetal Muscle Trunk	muscle
43	chr8:49465400-49468200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr8:49465600-49467600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:49465800-49467400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:49465800-49469000	Enhancers	Fetal Heart	heart
47	chr8:49466000-49466200	Enhancers	Fetal Intestine Large	intestine
48	chr8:49466000-49467800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr8:49466000-49467800	Enhancers	HSMM	muscle
50	chr8:49466000-49468200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links