Variant report

Variant	rs2891639
Chromosome Location	chr8:49441535-49441536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49426158..49428177-chr8:49440459..49442488,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10087276	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10087280	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10087665	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10092171	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10094801	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10097989	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10098707	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10110147	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10110839	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10282993	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10957175	0.89[MEX][hapmap]
rs1160606	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11774421	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11985324	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11992271	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11995181	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11997525	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1393550	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16937564	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16937767	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16937921	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16938118	0.86[LWK][hapmap];0.84[MEX][hapmap]
rs1910252	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1976450	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279300	0.80[MEX][hapmap]
rs2279301	0.80[MEX][hapmap]
rs2279302	0.80[MEX][hapmap]
rs2384925	0.89[MEX][hapmap]
rs28507516	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28689821	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5001149	1.00[CEU][hapmap];0.94[CHB][hapmap];0.88[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55851597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57846507	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6981394	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6990833	0.85[MEX][hapmap]
rs6998738	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7012665	0.84[JPT][hapmap];0.84[MEX][hapmap]
rs7016759	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72639043	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7817656	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7825135	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs868444	1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs931764	0.87[EUR][1000 genomes]
rs970214	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49428000-49448600	Weak transcription	Right Atrium	heart
2	chr8:49435800-49441800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:49435800-49442000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:49436200-49441800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:49436200-49442000	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr8:49436800-49444600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:49437200-49445400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:49438600-49441800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:49438600-49447600	Weak transcription	NHLF	lung
10	chr8:49438600-49457400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:49438800-49441800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:49439000-49442000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:49439200-49441600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:49439200-49441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:49439200-49442000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr8:49439200-49442200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:49439800-49447600	Weak transcription	Fetal Lung	lung
18	chr8:49440000-49447400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:49441000-49442400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr8:49441200-49441600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:49441200-49441600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr8:49441400-49443000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:49441400-49443800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links