Variant report

Variant	rs1976450
Chromosome Location	chr8:49456942-49456943
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49426903..49428543-chr8:49456209..49459000,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10087280	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10087665	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10092171	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10094801	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10097989	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10098707	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10110147	0.85[EUR][1000 genomes]
rs10110839	0.85[EUR][1000 genomes]
rs10282993	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1160606	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11774421	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11985324	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11992271	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11995181	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11997525	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1393550	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16937564	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16937767	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16937921	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1910252	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28507516	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28689821	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2891639	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5001149	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55851597	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57846507	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6981394	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6998738	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7016759	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72639043	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7817656	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7825135	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs868444	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs931764	0.85[EUR][1000 genomes]
rs970214	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49438600-49457400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49452800-49457000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:49454200-49457600	Weak transcription	Spleen	Spleen
4	chr8:49454400-49457000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49454400-49457800	Enhancers	Fetal Lung	lung
6	chr8:49454400-49458000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:49454400-49458000	Enhancers	Fetal Stomach	stomach
8	chr8:49454400-49458400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:49454400-49458600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:49454400-49458600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:49454600-49457000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:49454600-49457200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:49454600-49457600	Enhancers	NHDF-Ad	bronchial
14	chr8:49454600-49457800	Enhancers	Fetal Muscle Leg	muscle
15	chr8:49454600-49458600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:49454600-49459000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:49455000-49457000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:49455000-49457200	Enhancers	NH-A	brain
19	chr8:49455000-49457600	Enhancers	Adipose Nuclei	Adipose
20	chr8:49455000-49458400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:49455000-49458600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr8:49455200-49458000	Weak transcription	Colonic Mucosa	Colon
23	chr8:49455400-49457200	Enhancers	Fetal Kidney	kidney
24	chr8:49455400-49457400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr8:49455400-49457600	Weak transcription	Lung	lung
26	chr8:49455400-49458400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:49455400-49458600	Enhancers	H9 Cell Line	embryonic stem cell
28	chr8:49455400-49460600	Weak transcription	HMEC	breast
29	chr8:49455400-49462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr8:49455400-49462800	Weak transcription	Right Ventricle	heart
31	chr8:49455600-49458400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr8:49455800-49457200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:49455800-49459000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr8:49455800-49467800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:49456000-49457000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:49456200-49458600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr8:49456400-49457400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr8:49456400-49457400	Enhancers	Muscle Satellite Cultured Cells	--
39	chr8:49456400-49457600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:49456400-49461800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:49456400-49463400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:49456600-49457000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr8:49456600-49457400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr8:49456600-49457600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr8:49456600-49458000	Enhancers	Ovary	ovary
46	chr8:49456600-49462800	Weak transcription	NHLF	lung
47	chr8:49456800-49457000	Enhancers	Fetal Muscle Trunk	muscle
48	chr8:49456800-49457400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr8:49456800-49457600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr8:49456800-49457600	Enhancers	Osteobl	bone

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