Variant report

Variant	rs10092171
Chromosome Location	chr8:49427167-49427168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:
2	chr8:49425248..49427508-chr8:49492195..49495159,2	MCF-7	breast:
3	chr20:48599651..48600256-chr8:49426175..49427172,2	Hela-S3	cervix:
4	chr8:49426615..49429308-chr8:49832936..49835027,3	MCF-7	breast:
5	chr8:49427161..49428765-chr8:49437456..49440165,2	MCF-7	breast:
6	chr8:49420032..49424376-chr8:49425636..49428777,6	MCF-7	breast:
7	chr8:49426044..49428743-chr8:49433288..49436593,3	K562	blood:
8	chr11:62608644..62609150-chr8:49426940..49427727,2	HCT-116	colon:
9	chr8:49423563..49425293-chr8:49427104..49428839,2	MCF-7	breast:
10	chr8:49426786..49427372-chr8:49837914..49838955,3	MCF-7	breast:
11	chr8:49426903..49428543-chr8:49456209..49459000,2	MCF-7	breast:
12	chr8:49425428..49427661-chr8:49529540..49532467,2	MCF-7	breast:
13	chr8:49425401..49427959-chr8:49613311..49616115,2	K562	blood:
14	chr8:49425999..49428743-chr8:49432404..49436593,3	K562	blood:
15	chr8:49426158..49428177-chr8:49440459..49442488,2	MCF-7	breast:
16	chr8:49416623..49418414-chr8:49426088..49428237,3	MCF-7	breast:
17	chr8:49426670..49428318-chr8:49459036..49461539,2	K562	blood:
18	chr8:49426108..49428162-chr8:49531601..49534476,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction
ENSG00000253702	Chromatin interaction
ENSG00000253455	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10087280	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10087665	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10094801	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10097989	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10098707	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10110147	0.88[EUR][1000 genomes]
rs10110839	0.88[EUR][1000 genomes]
rs10113165	0.81[EUR][1000 genomes]
rs10282993	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1160606	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11774421	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11985324	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11985893	0.81[EUR][1000 genomes]
rs11992271	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11995181	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11997525	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1393550	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16937564	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16937767	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16937921	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1910252	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1976450	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2047787	0.81[EUR][1000 genomes]
rs28507516	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28689821	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2891639	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4554493	0.81[EUR][1000 genomes]
rs5001149	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55851597	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57846507	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6981394	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6998738	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7016759	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72639043	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7817656	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7825135	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs868444	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs931764	0.88[EUR][1000 genomes]
rs970214	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49425000-49427200	Weak transcription	Gastric	stomach
2	chr8:49426200-49427600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr8:49426400-49427400	Active TSS	Thymus	Thymus
4	chr8:49426400-49427400	Enhancers	Spleen	Spleen
5	chr8:49426600-49427400	Active TSS	Liver	Liver
6	chr8:49426600-49427800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
7	chr8:49426600-49427800	Active TSS	Small Intestine	intestine
8	chr8:49426600-49428000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:49426600-49428000	Active TSS	Brain Cingulate Gyrus	brain
10	chr8:49426600-49428000	Active TSS	Fetal Brain Female	brain
11	chr8:49426600-49428000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr8:49426600-49428200	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr8:49426600-49428200	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr8:49426800-49427200	Active TSS	Primary hematopoietic stem cells	blood
15	chr8:49426800-49427200	Active TSS	Colonic Mucosa	Colon
16	chr8:49426800-49427400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:49426800-49427400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:49426800-49427400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:49426800-49427400	Bivalent/Poised TSS	Primary monocytes fromperipheralblood	blood
20	chr8:49426800-49427400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
21	chr8:49426800-49427400	Active TSS	Stomach Mucosa	stomach
22	chr8:49426800-49427400	Active TSS	HSMM	muscle
23	chr8:49426800-49427400	Active TSS	HSMMtube	muscle
24	chr8:49426800-49427600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr8:49426800-49427600	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr8:49426800-49427600	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr8:49426800-49427600	Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr8:49426800-49427600	Active TSS	Primary T cells from cord blood	blood
29	chr8:49426800-49427600	Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr8:49426800-49427600	Active TSS	HepG2	liver
31	chr8:49426800-49427800	Active TSS	H1 Cell Line	embryonic stem cell
32	chr8:49426800-49427800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:49426800-49427800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:49426800-49427800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr8:49426800-49427800	Active TSS	HUES48 Cell Line	embryonic stem cell
36	chr8:49426800-49427800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:49426800-49427800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
38	chr8:49426800-49427800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr8:49426800-49427800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:49426800-49427800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr8:49426800-49427800	Active TSS	Brain Angular Gyrus	brain
42	chr8:49426800-49427800	Active TSS	Brain Hippocampus Middle	brain
43	chr8:49426800-49427800	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr8:49426800-49427800	Active TSS	Colon Smooth Muscle	Colon
45	chr8:49426800-49427800	Active TSS	Esophagus	oesophagus
46	chr8:49426800-49427800	Active TSS	Fetal Kidney	kidney
47	chr8:49426800-49427800	Active TSS	Left Ventricle	heart
48	chr8:49426800-49428000	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr8:49426800-49428000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
50	chr8:49426800-49428000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links