Variant report

Variant	rs57846507
Chromosome Location	chr8:49456395-49456396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49426903..49428543-chr8:49456209..49459000,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10087276	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10087280	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10087665	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10092171	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10094801	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10097989	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10098707	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10110147	0.87[EUR][1000 genomes]
rs10110839	0.87[EUR][1000 genomes]
rs10282993	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1160606	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11774421	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11985324	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11992271	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11995181	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11997525	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1393550	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937564	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16937767	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16937921	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1910252	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1976450	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28507516	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28689821	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2891639	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5001149	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55851597	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6981394	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6998738	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7016759	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72639043	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7817656	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7825135	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs868444	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs931764	0.87[EUR][1000 genomes]
rs970214	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49438600-49457400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49452800-49457000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:49454200-49457600	Weak transcription	Spleen	Spleen
4	chr8:49454400-49457000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:49454400-49457800	Enhancers	Fetal Lung	lung
6	chr8:49454400-49458000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:49454400-49458000	Enhancers	Fetal Stomach	stomach
8	chr8:49454400-49458400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr8:49454400-49458600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:49454400-49458600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:49454600-49457000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:49454600-49457200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:49454600-49457600	Enhancers	NHDF-Ad	bronchial
14	chr8:49454600-49457800	Enhancers	Fetal Muscle Leg	muscle
15	chr8:49454600-49458600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:49454600-49459000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr8:49454800-49456600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:49455000-49456600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr8:49455000-49456800	Enhancers	HSMM	muscle
20	chr8:49455000-49457000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:49455000-49457200	Enhancers	NH-A	brain
22	chr8:49455000-49457600	Enhancers	Adipose Nuclei	Adipose
23	chr8:49455000-49458400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:49455000-49458600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr8:49455200-49456400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:49455200-49456600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr8:49455200-49458000	Weak transcription	Colonic Mucosa	Colon
28	chr8:49455400-49456600	Weak transcription	Ovary	ovary
29	chr8:49455400-49457200	Enhancers	Fetal Kidney	kidney
30	chr8:49455400-49457400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr8:49455400-49457600	Weak transcription	Lung	lung
32	chr8:49455400-49458400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr8:49455400-49458600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr8:49455400-49460600	Weak transcription	HMEC	breast
35	chr8:49455400-49462800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:49455400-49462800	Weak transcription	Right Ventricle	heart
37	chr8:49455600-49456400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr8:49455600-49456800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr8:49455600-49458400	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr8:49455800-49456400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:49455800-49456800	Flanking Active TSS	Osteobl	bone
42	chr8:49455800-49457200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr8:49455800-49459000	Enhancers	Placenta Amnion	Placenta Amnion
44	chr8:49455800-49467800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr8:49456000-49456400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr8:49456000-49456400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr8:49456000-49456400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr8:49456000-49456600	Enhancers	HUVEC	blood vessel
49	chr8:49456000-49456600	Flanking Active TSS	NHLF	lung
50	chr8:49456000-49456800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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