Variant report

Variant	rs10097989
Chromosome Location	chr8:49438635-49438636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49427161..49428765-chr8:49437456..49440165,2	MCF-7	breast:
2	chr8:49425584..49432430-chr8:49432984..49438812,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253140	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10087276	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10087280	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10087665	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10092171	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10094801	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10098707	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10110147	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10110839	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10282993	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1160606	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11774421	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11985324	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11992271	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11995181	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11997525	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1393550	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16937564	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16937767	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16937921	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1910252	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1976450	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28507516	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28689821	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2891639	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5001149	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55851597	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57846507	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6981394	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6998738	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7016759	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72639043	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7817656	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7825135	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs868444	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs931764	0.86[EUR][1000 genomes]
rs970214	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49428000-49448600	Weak transcription	Right Atrium	heart
2	chr8:49432000-49438800	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49435200-49439400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49435200-49441400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:49435600-49439600	Weak transcription	NHDF-Ad	bronchial
6	chr8:49435800-49439000	Weak transcription	Osteobl	bone
7	chr8:49435800-49439600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:49435800-49441800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:49435800-49442000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:49436200-49440600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr8:49436200-49441800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:49436200-49442000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:49436400-49439800	Weak transcription	Aorta	Aorta
14	chr8:49436800-49444600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:49437200-49439000	Weak transcription	Esophagus	oesophagus
16	chr8:49437200-49445400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr8:49437600-49440000	Enhancers	Adipose Nuclei	Adipose
18	chr8:49437800-49439200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr8:49437800-49439200	Enhancers	Fetal Kidney	kidney
20	chr8:49437800-49439600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:49438000-49438800	Enhancers	Fetal Muscle Trunk	muscle
22	chr8:49438000-49438800	Bivalent Enhancer	Placenta	Placenta
23	chr8:49438000-49439200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:49438000-49439400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:49438000-49439600	Enhancers	Fetal Stomach	stomach
26	chr8:49438000-49439800	Enhancers	Fetal Lung	lung
27	chr8:49438000-49440000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:49438200-49438800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr8:49438200-49439000	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:49438200-49439000	Bivalent Enhancer	Fetal Intestine Small	intestine
31	chr8:49438200-49439200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:49438200-49439200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:49438200-49439200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr8:49438200-49439200	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr8:49438200-49439800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:49438400-49439000	Enhancers	HepG2	liver
37	chr8:49438600-49440000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:49438600-49441800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr8:49438600-49447600	Weak transcription	NHLF	lung
40	chr8:49438600-49457400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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