Variant report

Variant	rs10088491
Chromosome Location	chr8:104169840-104169841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10955310	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12056711	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12545903	0.98[ASN][1000 genomes]
rs13259545	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13264626	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13274504	0.98[ASN][1000 genomes]
rs1494276	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1497449	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1845430	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256164	0.81[ASN][1000 genomes]
rs2454012	0.84[AFR][1000 genomes]
rs2454013	0.92[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2454014	0.81[ASN][1000 genomes]
rs2515190	0.89[ASN][1000 genomes]
rs2515191	0.85[AMR][1000 genomes]
rs2935579	0.89[ASN][1000 genomes]
rs4734071	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4734689	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4734690	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61274078	0.99[ASN][1000 genomes]
rs7001897	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7014418	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72507596	0.99[ASN][1000 genomes]
rs72671377	0.98[ASN][1000 genomes]
rs991312	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104154000-104177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:104162800-104172600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:104165000-104176400	Weak transcription	NHDF-Ad	bronchial
4	chr8:104165000-104176600	Weak transcription	Osteobl	bone
5	chr8:104165400-104170200	Weak transcription	NHLF	lung
6	chr8:104166200-104179800	Weak transcription	Spleen	Spleen
7	chr8:104166400-104170200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104166600-104173200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:104166600-104178800	Weak transcription	Fetal Brain Male	brain
10	chr8:104168800-104170400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:104169000-104170200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:104169000-104177000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:104169000-104177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:104169000-104177000	Weak transcription	Brain Substantia Nigra	brain
15	chr8:104169200-104170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:104169200-104170800	Weak transcription	Brain Hippocampus Middle	brain
17	chr8:104169200-104171800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr8:104169200-104172000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:104169200-104176600	Weak transcription	Brain Anterior Caudate	brain
20	chr8:104169200-104177200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:104169400-104177600	Weak transcription	Brain Angular Gyrus	brain
22	chr8:104169800-104173800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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