Variant report

Variant	rs13264626
Chromosome Location	chr8:104170953-104170954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:104170015..104171839-chr8:104173105..104174842,2	K562	blood:
2	chr8:104170015..104172366-chr8:104173105..104175513,2	K562	blood:
3	chr8:104164075..104165989-chr8:104170147..104172239,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164929	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10955310	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12056711	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12545903	0.97[ASN][1000 genomes]
rs13259545	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13274504	0.97[ASN][1000 genomes]
rs1494276	0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497449	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1845430	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2249256	0.83[JPT][hapmap]
rs2256164	0.82[CHB][hapmap];0.87[JPT][hapmap];0.87[YRI][hapmap]
rs2454012	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2454013	0.81[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2454014	0.81[CHB][hapmap];0.87[JPT][hapmap];0.89[YRI][hapmap]
rs2515190	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs2515191	0.85[AMR][1000 genomes]
rs2935579	0.86[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs4734071	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4734689	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4734690	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61274078	0.98[ASN][1000 genomes]
rs7001897	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7014418	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72507596	0.98[ASN][1000 genomes]
rs72671377	0.99[ASN][1000 genomes]
rs991312	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104154000-104177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:104162800-104172600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:104165000-104176400	Weak transcription	NHDF-Ad	bronchial
4	chr8:104165000-104176600	Weak transcription	Osteobl	bone
5	chr8:104166200-104179800	Weak transcription	Spleen	Spleen
6	chr8:104166600-104173200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:104166600-104178800	Weak transcription	Fetal Brain Male	brain
8	chr8:104169000-104177000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:104169000-104177000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:104169000-104177000	Weak transcription	Brain Substantia Nigra	brain
11	chr8:104169200-104171800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:104169200-104172000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:104169200-104176600	Weak transcription	Brain Anterior Caudate	brain
14	chr8:104169200-104177200	Weak transcription	Brain Cingulate Gyrus	brain
15	chr8:104169400-104177600	Weak transcription	Brain Angular Gyrus	brain
16	chr8:104169800-104173800	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:104170200-104171000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:104170200-104171000	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr8:104170200-104171000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:104170400-104171400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:104170600-104171600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:104170800-104172600	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links