Variant report

Variant	rs1497449
Chromosome Location	chr8:104160723-104160724
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104149297..104151496-chr8:104160491..104162824,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10088491	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10955310	0.81[ASN][1000 genomes]
rs1113126	0.82[ASN][1000 genomes]
rs12056711	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12545903	0.87[ASN][1000 genomes]
rs13259545	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13264626	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13274504	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1494276	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1497450	0.83[ASN][1000 genomes]
rs1497451	0.81[ASN][1000 genomes]
rs1497452	0.80[ASN][1000 genomes]
rs1845430	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1846063	0.83[ASN][1000 genomes]
rs1846064	0.80[ASN][1000 genomes]
rs1976326	0.88[ASN][1000 genomes]
rs2132867	0.88[ASN][1000 genomes]
rs2249240	0.88[ASN][1000 genomes]
rs2249256	0.89[ASN][1000 genomes]
rs2256164	0.92[ASN][1000 genomes]
rs2454000	0.80[ASN][1000 genomes]
rs2454001	0.88[ASN][1000 genomes]
rs2454002	0.88[ASN][1000 genomes]
rs2454003	0.88[ASN][1000 genomes]
rs2454004	0.88[ASN][1000 genomes]
rs2454005	0.82[ASN][1000 genomes]
rs2454006	0.88[ASN][1000 genomes]
rs2454013	0.92[ASN][1000 genomes]
rs2454014	0.92[ASN][1000 genomes]
rs2454032	0.82[ASN][1000 genomes]
rs2454033	0.82[ASN][1000 genomes]
rs2454036	0.82[ASN][1000 genomes]
rs2454037	0.82[ASN][1000 genomes]
rs2515175	0.82[ASN][1000 genomes]
rs2515176	0.82[ASN][1000 genomes]
rs2515178	0.82[ASN][1000 genomes]
rs2515181	0.88[ASN][1000 genomes]
rs2515182	0.86[ASN][1000 genomes]
rs2515184	0.80[ASN][1000 genomes]
rs2515186	0.80[ASN][1000 genomes]
rs2515190	1.00[ASN][1000 genomes]
rs2515191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2935579	1.00[ASN][1000 genomes]
rs2935593	0.82[ASN][1000 genomes]
rs3019158	0.82[ASN][1000 genomes]
rs3019159	0.82[ASN][1000 genomes]
rs4734071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734687	0.82[ASN][1000 genomes]
rs4734689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61274078	0.87[ASN][1000 genomes]
rs7001897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014418	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72507596	0.87[ASN][1000 genomes]
rs72671377	0.87[ASN][1000 genomes]
rs953253	0.88[ASN][1000 genomes]
rs991312	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv1848810	chr8:104128496-104369288	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1844303	chr8:104128696-104369090	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104153800-104161200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:104154000-104177200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:104154200-104160800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:104155200-104163200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:104155600-104162800	Weak transcription	Fetal Brain Female	brain
6	chr8:104155600-104165400	Genic enhancers	Primary hematopoietic stem cells	blood
7	chr8:104155800-104161200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:104156000-104161200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr8:104156000-104163600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:104156400-104164200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:104156400-104164200	Weak transcription	Osteobl	bone
12	chr8:104158000-104161600	Enhancers	Brain Hippocampus Middle	brain
13	chr8:104158200-104164600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:104159000-104162400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:104159200-104161000	Weak transcription	Brain Anterior Caudate	brain
16	chr8:104159200-104162800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:104159200-104163600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:104159400-104162600	Weak transcription	Brain Substantia Nigra	brain
19	chr8:104159600-104161600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr8:104159800-104160800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:104159800-104161600	Enhancers	Left Ventricle	heart
22	chr8:104159800-104161600	Enhancers	Lung	lung
23	chr8:104159800-104162000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr8:104159800-104166200	Enhancers	Brain Cingulate Gyrus	brain
25	chr8:104160200-104161000	Enhancers	Adipose Nuclei	Adipose
26	chr8:104160200-104161800	Enhancers	Brain Angular Gyrus	brain
27	chr8:104160200-104162800	Weak transcription	Spleen	Spleen
28	chr8:104160200-104163600	Weak transcription	Right Ventricle	heart
29	chr8:104160400-104162200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:104160600-104161800	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr8:104160600-104162800	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links