Variant report

Variant	rs10088733
Chromosome Location	chr8:35470550-35470551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10103960	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10109360	1.00[EUR][1000 genomes]
rs10110486	0.95[AFR][1000 genomes]
rs11989789	1.00[EUR][1000 genomes]
rs11992399	1.00[EUR][1000 genomes]
rs16884211	1.00[EUR][1000 genomes]
rs28488471	1.00[EUR][1000 genomes]
rs28499038	1.00[EUR][1000 genomes]
rs28533378	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61251137	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35464200-35474600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:35464200-35482400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:35465600-35471000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:35466000-35480200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:35467400-35475800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:35468200-35472400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:35468600-35471000	Enhancers	Fetal Intestine Large	intestine
8	chr8:35469600-35473000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:35469600-35482000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:35469800-35470600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:35469800-35473400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:35470000-35473400	Weak transcription	Fetal Heart	heart
13	chr8:35470000-35483000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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