Variant report

Variant	rs28499038
Chromosome Location	chr8:35484474-35484475
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10088733	1.00[EUR][1000 genomes]
rs10103960	1.00[EUR][1000 genomes]
rs10109360	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11989789	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11992399	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16884211	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28488471	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28533378	1.00[EUR][1000 genomes]
rs61251137	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35481800-35484800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:35481800-35485000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr8:35482000-35484600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:35482600-35484600	Enhancers	Liver	Liver
5	chr8:35482800-35484800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:35482800-35484800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr8:35483400-35485200	Enhancers	Fetal Intestine Large	intestine
8	chr8:35483400-35489400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:35483600-35489600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:35483600-35493800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:35484200-35489400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:35484200-35489600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:35484200-35490000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links