Variant report

Variant	rs10088910
Chromosome Location	chr8:107250557-107250558
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10441507	0.92[EUR][1000 genomes]
rs16874259	1.00[ASN][1000 genomes]
rs17249646	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17328316	0.89[EUR][1000 genomes]
rs28446593	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28829989	0.89[EUR][1000 genomes]
rs28874718	0.89[EUR][1000 genomes]
rs28876969	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28880268	0.89[EUR][1000 genomes]
rs28880341	0.89[EUR][1000 genomes]
rs3897874	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60668588	1.00[ASN][1000 genomes]
rs60953670	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526130	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526132	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62526133	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107247000-107260200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107248800-107251000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:107249200-107251200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:107249400-107251200	Enhancers	Fetal Kidney	kidney
5	chr8:107249800-107251200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:107250000-107250800	Flanking Active TSS	HUVEC	blood vessel
7	chr8:107250000-107251200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107250200-107250800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:107250200-107251000	Enhancers	NH-A	brain
10	chr8:107250400-107251000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links