Variant report

Variant	rs28876969
Chromosome Location	chr8:107258644-107258645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088910	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10441507	0.91[EUR][1000 genomes]
rs16874259	1.00[ASN][1000 genomes]
rs17249646	0.91[EUR][1000 genomes]
rs17328316	0.95[EUR][1000 genomes]
rs28446593	0.91[EUR][1000 genomes]
rs28829989	0.95[EUR][1000 genomes]
rs28874718	0.95[EUR][1000 genomes]
rs28880268	0.95[EUR][1000 genomes]
rs28880341	0.95[EUR][1000 genomes]
rs3897874	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60668588	1.00[ASN][1000 genomes]
rs60953670	0.91[EUR][1000 genomes]
rs62526130	0.91[EUR][1000 genomes]
rs62526132	0.91[EUR][1000 genomes]
rs62526133	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107247000-107260200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107257600-107258800	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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