Variant report

Variant	rs16874259
Chromosome Location	chr8:107250750-107250751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10088910	1.00[ASN][1000 genomes]
rs11985881	1.00[EUR][1000 genomes]
rs11994500	1.00[EUR][1000 genomes]
rs11996443	1.00[EUR][1000 genomes]
rs16874230	1.00[EUR][1000 genomes]
rs16874332	1.00[EUR][1000 genomes]
rs16874403	1.00[EUR][1000 genomes]
rs16874438	1.00[EUR][1000 genomes]
rs28876969	1.00[ASN][1000 genomes]
rs3897874	1.00[ASN][1000 genomes]
rs58458066	1.00[EUR][1000 genomes]
rs60668588	1.00[ASN][1000 genomes]
rs60761894	1.00[EUR][1000 genomes]
rs61187847	1.00[EUR][1000 genomes]
rs61669783	1.00[EUR][1000 genomes]
rs6983507	1.00[EUR][1000 genomes]
rs6988902	1.00[EUR][1000 genomes]
rs6995675	1.00[EUR][1000 genomes]
rs7003695	1.00[EUR][1000 genomes]
rs73295379	1.00[EUR][1000 genomes]
rs73295396	1.00[EUR][1000 genomes]
rs73295402	1.00[EUR][1000 genomes]
rs73297406	1.00[EUR][1000 genomes]
rs73297408	1.00[EUR][1000 genomes]
rs73297411	1.00[EUR][1000 genomes]
rs73297420	1.00[EUR][1000 genomes]
rs73297443	1.00[EUR][1000 genomes]
rs73297450	1.00[EUR][1000 genomes]
rs7814668	1.00[EUR][1000 genomes]
rs7814901	1.00[EUR][1000 genomes]
rs7821927	1.00[EUR][1000 genomes]
rs7829062	1.00[EUR][1000 genomes]
rs7836158	1.00[EUR][1000 genomes]
rs7837743	1.00[EUR][1000 genomes]
rs7841522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107247000-107260200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:107248800-107251000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:107249200-107251200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:107249400-107251200	Enhancers	Fetal Kidney	kidney
5	chr8:107249800-107251200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:107250000-107250800	Flanking Active TSS	HUVEC	blood vessel
7	chr8:107250000-107251200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr8:107250200-107250800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:107250200-107251000	Enhancers	NH-A	brain
10	chr8:107250400-107251000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr8:107250600-107251000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr8:107250600-107251000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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