Variant report

Variant	rs7821927
Chromosome Location	chr8:107055675-107055676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107055539..107058466-chr8:107069487..107071012,2	K562	blood:
2	chr8:107047054..107052420-chr8:107054763..107060033,4	K562	blood:
3	chr8:107054893..107058550-chr8:107060735..107063239,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11985881	1.00[EUR][1000 genomes]
rs11994500	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11996443	1.00[EUR][1000 genomes]
rs11998719	0.93[AFR][1000 genomes]
rs16874230	1.00[EUR][1000 genomes]
rs16874259	1.00[EUR][1000 genomes]
rs55873238	0.89[AFR][1000 genomes]
rs57346414	0.98[AFR][1000 genomes]
rs57848428	0.82[AFR][1000 genomes]
rs58458066	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59525290	0.84[AFR][1000 genomes]
rs60761894	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60814999	0.82[AFR][1000 genomes]
rs61187847	1.00[EUR][1000 genomes]
rs61669783	1.00[EUR][1000 genomes]
rs6469025	0.89[AFR][1000 genomes]
rs6983507	0.93[YRI][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6988902	1.00[EUR][1000 genomes]
rs7003695	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7009606	0.84[AFR][1000 genomes]
rs73293483	0.83[AFR][1000 genomes]
rs73295323	0.89[AFR][1000 genomes]
rs73295379	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73295396	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73295402	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73297406	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73297408	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73297411	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73297420	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73297443	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73297450	1.00[EUR][1000 genomes]
rs73700537	0.84[AFR][1000 genomes]
rs7814668	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7814901	1.00[EUR][1000 genomes]
rs7829062	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7837743	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv611841	chr8:107048059-107090500	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107044800-107057200	Weak transcription	Aorta	Aorta
2	chr8:107045000-107057400	Weak transcription	Hela-S3	cervix
3	chr8:107046000-107057200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:107052200-107069200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107053800-107058200	Weak transcription	K562	blood
6	chr8:107055400-107056400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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