Variant report

Variant	rs59525290
Chromosome Location	chr8:107043658-107043659
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11994500	0.84[AFR][1000 genomes]
rs11996443	0.85[AMR][1000 genomes]
rs11998719	0.81[AFR][1000 genomes]
rs57346414	0.85[AFR][1000 genomes]
rs60814999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61669783	0.85[AMR][1000 genomes]
rs7009606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295379	0.84[AFR][1000 genomes]
rs73295396	0.84[AFR][1000 genomes]
rs73297406	0.81[AFR][1000 genomes]
rs73700537	1.00[AFR][1000 genomes]
rs7814668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7821927	0.84[AFR][1000 genomes]
rs7829062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7837743	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107036400-107052000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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