Variant report

Variant	rs57346414
Chromosome Location	chr8:107021421-107021422
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11994500	0.98[AFR][1000 genomes]
rs11998719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873238	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57848428	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58458066	0.84[AFR][1000 genomes]
rs59525290	0.85[AFR][1000 genomes]
rs60761894	0.84[AFR][1000 genomes]
rs60814999	0.84[AFR][1000 genomes]
rs6469025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7009606	0.85[AFR][1000 genomes]
rs73293483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293490	1.00[AMR][1000 genomes]
rs73295323	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295379	0.98[AFR][1000 genomes]
rs73295396	0.98[AFR][1000 genomes]
rs73295402	0.80[AFR][1000 genomes]
rs73297406	0.95[AFR][1000 genomes]
rs73297443	0.87[AFR][1000 genomes]
rs73700537	0.85[AFR][1000 genomes]
rs7814668	0.85[AFR][1000 genomes]
rs7821927	0.98[AFR][1000 genomes]
rs7829062	0.85[AFR][1000 genomes]
rs7837743	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107012800-107022200	Weak transcription	NH-A	brain
2	chr8:107013000-107023400	Weak transcription	A549	lung
3	chr8:107013800-107031000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:107019200-107022400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107021000-107022400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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