Variant report

Variant	rs57848428
Chromosome Location	chr8:107024711-107024712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11994500	0.82[AFR][1000 genomes]
rs11998719	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873238	1.00[AMR][1000 genomes]
rs57346414	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6469025	1.00[AMR][1000 genomes]
rs73293483	1.00[AMR][1000 genomes]
rs73293490	1.00[AMR][1000 genomes]
rs73295323	1.00[AMR][1000 genomes]
rs73295379	0.82[AFR][1000 genomes]
rs73295396	0.82[AFR][1000 genomes]
rs73295402	0.92[AFR][1000 genomes]
rs73297443	0.81[AFR][1000 genomes]
rs7821927	0.82[AFR][1000 genomes]
rs7837743	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107013800-107031000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107022000-107024800	Enhancers	HUVEC	blood vessel
3	chr8:107022400-107025000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:107022400-107027400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107023400-107024800	Enhancers	A549	lung
6	chr8:107023600-107024800	Enhancers	Hela-S3	cervix
7	chr8:107023600-107024800	Enhancers	K562	blood
8	chr8:107023600-107025000	Enhancers	NHDF-Ad	bronchial
9	chr8:107023800-107024800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:107024200-107024800	Enhancers	NH-A	brain
11	chr8:107024200-107024800	Enhancers	NHLF	lung
12	chr8:107024200-107024800	Enhancers	Osteobl	bone
13	chr8:107024200-107025400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:107024400-107025200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:107024400-107025200	Enhancers	Primary hematopoietic stem cells	blood
16	chr8:107024400-107025200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:107024600-107024800	Enhancers	Dnd41	blood
18	chr8:107024600-107025200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:107024600-107027000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links