Variant report

Variant	rs6469025
Chromosome Location	chr8:107002655-107002656
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11994500	0.89[AFR][1000 genomes]
rs11998719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57346414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57848428	1.00[AMR][1000 genomes]
rs6983507	0.82[YRI][hapmap]
rs73293483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293490	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295379	0.89[AFR][1000 genomes]
rs73295396	0.89[AFR][1000 genomes]
rs73297406	0.86[AFR][1000 genomes]
rs7821927	0.89[AFR][1000 genomes]
rs7837743	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:106998800-107003600	Weak transcription	NH-A	brain
2	chr8:107000400-107002800	Enhancers	Colon Smooth Muscle	Colon
3	chr8:107000600-107006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:107000800-107005400	Weak transcription	Aorta	Aorta
5	chr8:107000800-107009000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107001400-107002800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:107001400-107002800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:107001400-107003000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:107001600-107002800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr8:107001600-107003200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:107001800-107002800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:107002400-107003200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:107002400-107003400	Weak transcription	Fetal Kidney	kidney
14	chr8:107002600-107006400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:107002600-107006600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:107002600-107006800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr8:107002600-107007000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links