Variant report
| Variant | rs11985881 |
|---|---|
| Chromosome Location | chr8:107080505-107080506 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11994500 | 1.00[EUR][1000 genomes] |
| rs11996443 | 1.00[EUR][1000 genomes] |
| rs16874230 | 1.00[EUR][1000 genomes] |
| rs16874259 | 1.00[EUR][1000 genomes] |
| rs58458066 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60761894 | 1.00[EUR][1000 genomes] |
| rs61187847 | 1.00[EUR][1000 genomes] |
| rs61669783 | 1.00[EUR][1000 genomes] |
| rs6983507 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6988902 | 1.00[EUR][1000 genomes] |
| rs7003695 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73295379 | 1.00[EUR][1000 genomes] |
| rs73295396 | 1.00[EUR][1000 genomes] |
| rs73295402 | 1.00[EUR][1000 genomes] |
| rs73297406 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297408 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297411 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297420 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297443 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73297450 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7814668 | 1.00[EUR][1000 genomes] |
| rs7814901 | 1.00[EUR][1000 genomes] |
| rs7821927 | 1.00[EUR][1000 genomes] |
| rs7829062 | 1.00[EUR][1000 genomes] |
| rs7837743 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv611841 | chr8:107048059-107090500 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv611842 | chr8:107076421-107115482 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv891262 | chr8:107076421-107209378 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107079200-107082000 | Weak transcription | Fetal Heart | heart |
