Variant report

Variant	rs16874403
Chromosome Location	chr8:107342709-107342710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16874230	1.00[EUR][1000 genomes]
rs16874259	1.00[EUR][1000 genomes]
rs16874332	1.00[EUR][1000 genomes]
rs16874438	1.00[EUR][1000 genomes]
rs6988902	1.00[EUR][1000 genomes]
rs6995675	1.00[EUR][1000 genomes]
rs7836158	1.00[EUR][1000 genomes]
rs7841522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107308600-107348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:107332600-107351400	Weak transcription	Aorta	Aorta
3	chr8:107339000-107355600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107340400-107351000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:107340600-107345600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107341600-107344000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr8:107342000-107342800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:107342000-107343000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:107342200-107342800	Enhancers	Brain Hippocampus Middle	brain
10	chr8:107342400-107348400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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