Variant report

Variant	rs16874332
Chromosome Location	chr8:107312721-107312722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11996443	1.00[EUR][1000 genomes]
rs16874230	1.00[EUR][1000 genomes]
rs16874259	1.00[EUR][1000 genomes]
rs16874403	1.00[EUR][1000 genomes]
rs16874438	1.00[EUR][1000 genomes]
rs6988902	1.00[EUR][1000 genomes]
rs6995675	1.00[EUR][1000 genomes]
rs7836158	1.00[EUR][1000 genomes]
rs7841522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107284800-107331800	Weak transcription	Aorta	Aorta
2	chr8:107302200-107322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107308600-107333400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107308600-107348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:107312000-107313200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:107312000-107313200	Enhancers	NHDF-Ad	bronchial
7	chr8:107312000-107313400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:107312000-107313400	Enhancers	HUVEC	blood vessel
9	chr8:107312200-107313200	Enhancers	Osteobl	bone
10	chr8:107312400-107313000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr8:107312400-107313000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:107312400-107313200	Enhancers	NH-A	brain
13	chr8:107312400-107313400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:107312600-107313000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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