Variant report

Variant	rs10089833
Chromosome Location	chr8:117715219-117715220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117715057..117715939-chr8:117778014..117778738,2	MCF-7	breast:
2	chr8:117709011..117712281-chr8:117714781..117718785,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147677	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10089815	0.83[EUR][1000 genomes]
rs10108262	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10111411	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10156225	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808483	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11775890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779352	0.85[ASN][1000 genomes]
rs12155774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12375316	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547079	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12547108	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13257365	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13260809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264928	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28431802	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34007155	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35792844	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4129066	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4304349	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4344109	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406425	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4532623	0.81[EUR][1000 genomes]
rs4637871	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876672	0.80[EUR][1000 genomes]
rs4876673	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4876677	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4876678	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62510182	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6469659	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6995719	0.85[ASN][1000 genomes]
rs6995838	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7004009	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011256	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7823870	0.81[EUR][1000 genomes]
rs9792358	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117671000-117717600	Weak transcription	HepG2	liver
2	chr8:117699000-117719000	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:117701400-117716200	Weak transcription	Fetal Heart	heart
4	chr8:117703400-117721200	Weak transcription	HSMM	muscle
5	chr8:117703600-117715400	Weak transcription	Fetal Stomach	stomach
6	chr8:117703800-117721000	Weak transcription	NH-A	brain
7	chr8:117704000-117720000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:117704600-117715400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:117704600-117722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:117706000-117720800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:117706600-117719200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:117707200-117718200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:117707200-117726800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:117707600-117721400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:117707800-117717600	Weak transcription	Stomach Mucosa	stomach
16	chr8:117707800-117721400	Weak transcription	NHDF-Ad	bronchial
17	chr8:117707800-117732600	Weak transcription	Fetal Thymus	thymus
18	chr8:117708000-117715400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr8:117708000-117715600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:117708000-117715600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:117708000-117715600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:117708000-117715600	Weak transcription	Left Ventricle	heart
23	chr8:117708000-117715600	Weak transcription	Lung	lung
24	chr8:117708000-117715600	Weak transcription	Pancreas	Pancrea
25	chr8:117708000-117717000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr8:117708000-117717600	Weak transcription	Right Ventricle	heart
27	chr8:117708000-117717800	Weak transcription	Psoas Muscle	Psoas
28	chr8:117708000-117718800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:117708000-117718800	Weak transcription	Aorta	Aorta
30	chr8:117708000-117720200	Weak transcription	Thymus	Thymus
31	chr8:117708000-117721000	Weak transcription	HMEC	breast
32	chr8:117708000-117721400	Weak transcription	Dnd41	blood
33	chr8:117708000-117721600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr8:117708000-117733200	Weak transcription	Hela-S3	cervix
35	chr8:117708200-117715600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:117708200-117721200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr8:117708400-117727000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:117708400-117727000	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:117708600-117717000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:117708600-117717200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr8:117708600-117717600	Weak transcription	K562	blood
42	chr8:117708600-117721200	Weak transcription	NHEK	skin
43	chr8:117708600-117732800	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr8:117708600-117733200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:117708600-117733200	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr8:117709200-117716600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr8:117709400-117715600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr8:117709600-117716800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr8:117709800-117716400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr8:117709800-117717600	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links