Variant report

Variant	rs4406425
Chromosome Location	chr8:117648454-117648455
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:117640802..117642344-chr8:117647571..117649288,2	MCF-7	breast:
2	chr8:117646178..117650015-chr8:117654709..117657673,3	K562	blood:
3	chr8:117646435..117648645-chr8:117656043..117658765,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10089833	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10108262	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10111411	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10156225	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10808483	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11775890	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11779352	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12155774	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12375316	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12547079	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12547108	0.87[AMR][1000 genomes]
rs13257365	0.86[AMR][1000 genomes]
rs13260809	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13264928	0.86[AMR][1000 genomes]
rs28431802	0.85[AMR][1000 genomes]
rs34007155	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35792844	0.81[AMR][1000 genomes]
rs4129066	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4304349	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4344109	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4637871	0.90[AMR][1000 genomes]
rs4876673	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4876677	0.82[AMR][1000 genomes]
rs4876678	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs62510182	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6469659	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6995838	1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7004009	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7011256	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1020480	chr8:117630683-117652448	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117636400-117670800	Weak transcription	Pancreas	Pancrea
2	chr8:117637400-117656600	Weak transcription	Aorta	Aorta
3	chr8:117638800-117649000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:117640600-117662000	Weak transcription	Fetal Brain Female	brain
5	chr8:117641200-117665600	Weak transcription	Fetal Brain Male	brain
6	chr8:117642000-117655800	Weak transcription	Lung	lung
7	chr8:117642400-117654800	Weak transcription	Primary B cells from cord blood	blood
8	chr8:117642400-117656600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:117643800-117655600	Weak transcription	Left Ventricle	heart
10	chr8:117644000-117655400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:117644000-117655600	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:117644000-117655600	Weak transcription	Fetal Stomach	stomach
13	chr8:117644000-117655800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:117644000-117656600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:117644000-117657600	Weak transcription	NHEK	skin
16	chr8:117644600-117655400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:117644800-117656200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr8:117646400-117650200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:117646600-117656600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr8:117646800-117649800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:117647200-117677800	Weak transcription	Gastric	stomach
22	chr8:117647600-117649000	Enhancers	Brain Cingulate Gyrus	brain
23	chr8:117647600-117654000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr8:117647600-117658400	Weak transcription	Brain Hippocampus Middle	brain
25	chr8:117647800-117648600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:117647800-117655000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:117648000-117650800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr8:117648000-117655400	Weak transcription	Primary T cells from cord blood	blood
29	chr8:117648000-117667400	Weak transcription	Fetal Heart	heart
30	chr8:117648400-117649200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr8:117648400-117650200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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