Variant report

Variant	rs4876677
Chromosome Location	chr8:117752996-117752997
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:117745068..117749495-chr8:117750950..117754600,6	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10089815	0.81[AFR][1000 genomes]
rs10089833	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10094452	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs10108262	0.81[ASN][1000 genomes]
rs10111411	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10156225	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10283122	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10505285	0.86[YRI][hapmap]
rs10808483	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10808485	0.95[YRI][hapmap];0.81[AFR][1000 genomes]
rs11775890	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11779352	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12155774	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12375316	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12547063	0.86[YRI][hapmap]
rs12547079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12547108	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13257365	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13258789	0.95[AFR][1000 genomes]
rs13260809	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13264928	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13266314	0.84[YRI][hapmap];0.86[AFR][1000 genomes]
rs16888705	0.84[YRI][hapmap]
rs16888709	0.84[YRI][hapmap]
rs16888721	0.85[YRI][hapmap]
rs28431802	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34007155	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35792844	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4129066	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41339048	0.84[YRI][hapmap]
rs4304349	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4344109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4372028	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4406425	0.82[AMR][1000 genomes]
rs4449824	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4637871	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876673	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4876675	0.85[AFR][1000 genomes]
rs4876678	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62510182	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6469659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983034	0.82[AFR][1000 genomes]
rs6995719	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6995838	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7004009	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792358	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117733600-117766600	Weak transcription	Fetal Lung	lung
2	chr8:117733600-117766800	Weak transcription	Adipose Nuclei	Adipose
3	chr8:117734400-117762000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:117734400-117766800	Weak transcription	Fetal Stomach	stomach
5	chr8:117734600-117766200	Weak transcription	Fetal Muscle Leg	muscle
6	chr8:117734600-117766400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr8:117734600-117766800	Weak transcription	Fetal Intestine Small	intestine
8	chr8:117734600-117767200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:117734800-117766200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:117735000-117766000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr8:117735000-117766200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:117737400-117766600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:117737600-117766800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:117737800-117767200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:117738200-117766400	Weak transcription	Placenta	Placenta
16	chr8:117738400-117755400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:117738400-117764200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr8:117739000-117766000	Weak transcription	Liver	Liver
19	chr8:117739800-117760800	Weak transcription	Dnd41	blood
20	chr8:117741000-117766800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr8:117741200-117764400	Weak transcription	HepG2	liver
22	chr8:117741200-117767400	Weak transcription	Aorta	Aorta
23	chr8:117742800-117759400	Weak transcription	Esophagus	oesophagus
24	chr8:117742800-117766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:117742800-117767400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr8:117744000-117766800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:117744200-117766400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr8:117744400-117757200	Weak transcription	K562	blood
29	chr8:117744400-117758800	Weak transcription	Fetal Thymus	thymus
30	chr8:117744400-117766200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:117745600-117753000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr8:117745600-117762000	Weak transcription	Left Ventricle	heart
33	chr8:117745600-117766600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr8:117745600-117766800	Weak transcription	Right Ventricle	heart
35	chr8:117745800-117753400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr8:117745800-117755000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:117745800-117762000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr8:117745800-117765800	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:117746400-117759600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr8:117747800-117762000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:117748000-117756600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr8:117748000-117764000	Weak transcription	HMEC	breast
43	chr8:117748200-117757800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:117748200-117767000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr8:117748200-117767400	Weak transcription	Lung	lung
46	chr8:117748400-117766800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr8:117748600-117756800	Weak transcription	Primary B cells from cord blood	blood
48	chr8:117748600-117757600	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr8:117748600-117763600	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr8:117748800-117753800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links