Variant report
| Variant | rs10090005 |
|---|---|
| Chromosome Location | chr8:34729931-34729932 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10090035 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap] |
| rs10096577 | 1.00[ASN][1000 genomes] |
| rs10103208 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs10103252 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10104896 | 1.00[ASN][1000 genomes] |
| rs10107481 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10112130 | 1.00[ASN][1000 genomes] |
| rs11993809 | 1.00[ASN][1000 genomes] |
| rs1316843 | 1.00[ASN][1000 genomes] |
| rs16883090 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16883121 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16883159 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs28505963 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28538999 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28560398 | 1.00[ASN][1000 genomes] |
| rs28569302 | 1.00[ASN][1000 genomes] |
| rs59941041 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60330644 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60644885 | 1.00[ASN][1000 genomes] |
| rs7000035 | 1.00[ASN][1000 genomes] |
| rs7015192 | 1.00[ASN][1000 genomes] |
| rs73576176 | 1.00[ASN][1000 genomes] |
| rs73582110 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7820823 | 1.00[EUR][1000 genomes] |
| rs7827849 | 1.00[ASN][1000 genomes] |
| rs7836686 | 1.00[ASN][1000 genomes] |
| rs7842929 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3693375 | chr8:34631970-34780509 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv972208 | chr8:34644254-34790092 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv890716 | chr8:34707436-34822797 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv981927 | chr8:34727378-34732854 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
