Variant report

Variant	rs7000035
Chromosome Location	chr8:34714811-34714812
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10090005	1.00[CHB][hapmap];0.85[GIH][hapmap]
rs10090035	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10096577	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103208	1.00[CHB][hapmap]
rs10103252	1.00[ASN][1000 genomes]
rs10104896	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107481	1.00[ASN][1000 genomes]
rs10112130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11993809	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1316843	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883090	1.00[ASN][1000 genomes]
rs16883121	1.00[ASN][1000 genomes]
rs16883159	1.00[CHB][hapmap]
rs28505963	1.00[ASN][1000 genomes]
rs28538999	1.00[ASN][1000 genomes]
rs28560398	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28569302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59941041	1.00[ASN][1000 genomes]
rs60330644	1.00[ASN][1000 genomes]
rs60644885	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7015192	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73576176	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73582110	1.00[ASN][1000 genomes]
rs7827849	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7836686	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7842929	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv890716	chr8:34707436-34822797	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34708800-34717400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:34714400-34715000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr8:34714400-34715000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:34714600-34715000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:34714800-34715000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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