Variant report

Variant	rs28538999
Chromosome Location	chr8:34694770-34694771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10096577	1.00[ASN][1000 genomes]
rs10103252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104896	1.00[ASN][1000 genomes]
rs10107481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112130	1.00[ASN][1000 genomes]
rs11993809	1.00[ASN][1000 genomes]
rs1316843	1.00[ASN][1000 genomes]
rs16883090	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28505963	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28560398	1.00[ASN][1000 genomes]
rs28569302	1.00[ASN][1000 genomes]
rs59941041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60330644	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60644885	1.00[ASN][1000 genomes]
rs7000035	1.00[ASN][1000 genomes]
rs7015192	1.00[ASN][1000 genomes]
rs73576176	1.00[ASN][1000 genomes]
rs73582110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7827849	1.00[ASN][1000 genomes]
rs7836686	1.00[ASN][1000 genomes]
rs7842929	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890715	chr8:34568015-34700530	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv465635	chr8:34631970-34710118	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv610932	chr8:34631970-34710118	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3693375	chr8:34631970-34780509	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv972208	chr8:34644254-34790092	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv465636	chr8:34649550-34710118	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv610933	chr8:34649550-34710118	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv6148	chr8:34669644-34714096	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:34673400-34701600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:34690400-34695000	Weak transcription	HUVEC	blood vessel
3	chr8:34694600-34696600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:34694600-34696600	Enhancers	HMEC	breast

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