Variant report

Variant	rs10090010
Chromosome Location	chr8:102635270-102635271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102503334..102507333-chr8:102630459..102637316,8	MCF-7	breast:
2	chr8:102609140..102610873-chr8:102634437..102637067,2	MCF-7	breast:
3	chr8:102629337..102631052-chr8:102635041..102637641,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000083307	Chromatin interaction
ENSG00000254024	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10091039	0.92[AMR][1000 genomes]
rs10093301	0.80[AMR][1000 genomes]
rs10101770	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10106317	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16868083	1.00[CHB][hapmap]
rs16868133	0.80[AMR][1000 genomes]
rs16868159	0.92[ASN][1000 genomes]
rs16868196	0.84[ASN][1000 genomes]
rs2275994	1.00[CHB][hapmap]
rs2387626	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4507732	1.00[CHB][hapmap]
rs6996060	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757285	chr8:102609474-102649681	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2759635	chr8:102609474-102649681	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2761235	chr8:102613079-102646059	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv3359466	chr8:102634176-102638574	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102616800-102643800	Weak transcription	Gastric	stomach
2	chr8:102618000-102640800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:102619800-102656200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:102620800-102637800	Weak transcription	HUVEC	blood vessel
5	chr8:102621200-102635800	Weak transcription	Pancreas	Pancrea
6	chr8:102624200-102635400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:102625400-102635400	Weak transcription	Esophagus	oesophagus
8	chr8:102625400-102635400	Weak transcription	HMEC	breast
9	chr8:102627600-102635800	Weak transcription	Fetal Kidney	kidney
10	chr8:102627800-102639000	Weak transcription	Stomach Mucosa	stomach
11	chr8:102627800-102643800	Weak transcription	Fetal Intestine Large	intestine
12	chr8:102628200-102643600	Weak transcription	Fetal Intestine Small	intestine
13	chr8:102630400-102644000	Weak transcription	Lung	lung
14	chr8:102630800-102641600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:102630800-102642800	Weak transcription	Fetal Stomach	stomach
16	chr8:102631400-102635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr8:102631400-102635800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:102631600-102637000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr8:102631800-102637600	Strong transcription	H1 Cell Line	embryonic stem cell
20	chr8:102632400-102638800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:102632600-102635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr8:102633000-102635400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr8:102634600-102637200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:102634800-102636800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:102634800-102636800	Strong transcription	Placenta	Placenta
26	chr8:102635000-102636400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr8:102635000-102636400	Strong transcription	Placenta Amnion	Placenta Amnion
28	chr8:102635000-102636800	Strong transcription	NHEK	skin
29	chr8:102635000-102637400	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:102635200-102636200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:102635200-102636600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr8:102635200-102636600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr8:102635200-102636800	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr8:102635200-102636800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:102635200-102637000	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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