Variant report

Variant	rs16868159
Chromosome Location	chr8:102672227-102672228
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102664916..102667894-chr8:102671918..102674454,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090010	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs10091039	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10093301	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10099482	0.83[EUR][1000 genomes]
rs10099649	0.83[EUR][1000 genomes]
rs10101770	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10106317	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107483	1.00[CEU][hapmap]
rs10108888	0.82[CEU][hapmap]
rs10111577	0.83[EUR][1000 genomes]
rs10111904	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868083	1.00[CHB][hapmap]
rs16868132	0.81[EUR][1000 genomes]
rs16868133	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868134	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868139	0.85[EUR][1000 genomes]
rs16868178	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs16868196	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16868197	0.83[EUR][1000 genomes]
rs2275994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387626	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs28469577	0.81[EUR][1000 genomes]
rs3939935	0.81[EUR][1000 genomes]
rs4507732	1.00[CHB][hapmap]
rs4734564	0.84[EUR][1000 genomes]
rs4734582	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6996060	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816488	1.00[CEU][hapmap]
rs7816613	1.00[CEU][hapmap]
rs7821322	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7821561	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
3	chr8:102659200-102679400	Weak transcription	HMEC	breast
4	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
5	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
7	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:102664400-102676800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
10	chr8:102664800-102676800	Weak transcription	Gastric	stomach
11	chr8:102664800-102677000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:102665400-102676400	Weak transcription	Fetal Intestine Large	intestine
13	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
14	chr8:102668800-102674000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:102669000-102674000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:102669200-102677000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:102669400-102676400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr8:102669400-102676600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr8:102669400-102676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr8:102669400-102676600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr8:102670600-102672400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:102670600-102676200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr8:102670600-102677600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:102670600-102680600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:102670800-102672600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:102670800-102674400	Weak transcription	Pancreas	Pancrea
27	chr8:102670800-102676400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr8:102670800-102676600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:102670800-102677400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr8:102670800-102677400	Weak transcription	NHEK	skin
31	chr8:102670800-102678800	Weak transcription	Esophagus	oesophagus
32	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
33	chr8:102671000-102673800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:102671200-102676800	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr8:102671800-102678600	Weak transcription	Lung	lung
36	chr8:102672000-102676200	Weak transcription	Placenta	Placenta

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