Variant report

Variant	rs10101770
Chromosome Location	chr8:102668312-102668313
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102667718..102669402-chr8:102670482..102672103,2	MCF-7	breast:
2	chr8:102661081..102663898-chr8:102668064..102670538,3	MCF-7	breast:
3	chr8:102664289..102666765-chr8:102667718..102671185,4	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090010	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10091039	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10093301	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10099482	0.85[EUR][1000 genomes]
rs10099649	0.85[EUR][1000 genomes]
rs10106317	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10107483	1.00[CEU][hapmap]
rs10108888	1.00[CEU][hapmap]
rs10111577	0.85[EUR][1000 genomes]
rs10111904	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868083	1.00[CHB][hapmap]
rs16868132	0.85[EUR][1000 genomes]
rs16868133	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868134	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16868139	0.89[EUR][1000 genomes]
rs16868159	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868178	0.87[CEU][hapmap];0.86[MKK][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs16868196	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16868197	0.85[EUR][1000 genomes]
rs2275994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2387626	0.86[ASW][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs28469577	0.85[EUR][1000 genomes]
rs3939935	0.85[EUR][1000 genomes]
rs4507732	1.00[CHB][hapmap]
rs4734564	0.88[EUR][1000 genomes]
rs4734582	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs6996060	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816488	1.00[CEU][hapmap]
rs7816613	1.00[CEU][hapmap]
rs7821322	1.00[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs7821561	1.00[CEU][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10101770	ODF1	cis	parietal	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102644800-102674600	Weak transcription	Ovary	ovary
2	chr8:102651400-102681200	Weak transcription	Stomach Mucosa	stomach
3	chr8:102655200-102669400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:102659200-102679400	Weak transcription	HMEC	breast
5	chr8:102661200-102678600	Weak transcription	Fetal Stomach	stomach
6	chr8:102661600-102678800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:102661800-102668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:102661800-102678600	Weak transcription	Colonic Mucosa	Colon
9	chr8:102662600-102668400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:102663000-102676400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:102664400-102676800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr8:102664400-102678600	Weak transcription	Fetal Intestine Small	intestine
13	chr8:102664800-102668400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:102664800-102676800	Weak transcription	Gastric	stomach
15	chr8:102664800-102677000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr8:102665000-102670200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:102665000-102670200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:102665400-102669400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:102665400-102676400	Weak transcription	Fetal Intestine Large	intestine
20	chr8:102665600-102668600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:102665800-102669000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:102667600-102669200	Strong transcription	NHEK	skin
23	chr8:102667600-102669400	Strong transcription	Placenta Amnion	Placenta Amnion
24	chr8:102667600-102682800	Weak transcription	Aorta	Aorta
25	chr8:102667800-102669600	Strong transcription	Placenta	Placenta
26	chr8:102668000-102668800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr8:102668000-102669400	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr8:102668200-102668600	Strong transcription	Esophagus	oesophagus
29	chr8:102668200-102669200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr8:102668200-102669400	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr8:102668200-102669400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr8:102668200-102670800	Strong transcription	Pancreas	Pancrea
33	chr8:102668200-102671000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:102668200-102671200	Strong transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links