Variant report

Variant	rs7816488
Chromosome Location	chr8:102729403-102729404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10107483	1.00[CEU][hapmap];0.90[GIH][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes]
rs10108888	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1080598	0.93[EUR][1000 genomes]
rs16868178	0.87[CEU][hapmap]
rs2275994	1.00[CEU][hapmap]
rs28429768	0.91[EUR][1000 genomes]
rs28560062	0.91[EUR][1000 genomes]
rs28564461	0.87[EUR][1000 genomes]
rs4734582	1.00[CEU][hapmap]
rs72674296	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7816613	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821322	1.00[CEU][hapmap]
rs7821561	1.00[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7816488	ODF1	cis	parietal	SCAN
rs7816488	RIMS2	cis	parietal	SCAN

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
2	chr8:102713800-102768400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:102714600-102740800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:102716000-102733000	Weak transcription	Fetal Heart	heart
5	chr8:102716200-102734000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:102716600-102731200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:102716800-102730600	Weak transcription	Left Ventricle	heart
8	chr8:102722000-102738200	Weak transcription	GM12878-XiMat	blood
9	chr8:102722800-102730600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:102722800-102730800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:102722800-102734200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:102723000-102731400	Weak transcription	Lung	lung
13	chr8:102723000-102733800	Weak transcription	Gastric	stomach
14	chr8:102723200-102730000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:102723400-102729600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:102723400-102730200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr8:102727800-102733000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:102728800-102729600	Enhancers	Fetal Muscle Leg	muscle
19	chr8:102728800-102730000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:102728800-102730000	Enhancers	Fetal Stomach	stomach
21	chr8:102728800-102730200	Enhancers	Brain Hippocampus Middle	brain
22	chr8:102728800-102730400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr8:102728800-102730400	Enhancers	Fetal Lung	lung
24	chr8:102728800-102730800	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr8:102728800-102731000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr8:102728800-102731400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr8:102728800-102732800	Enhancers	Fetal Kidney	kidney
28	chr8:102729000-102729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr8:102729000-102729600	Enhancers	Adipose Nuclei	Adipose
30	chr8:102729000-102730000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr8:102729000-102730000	Enhancers	Brain Substantia Nigra	brain
32	chr8:102729000-102730200	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr8:102729000-102730400	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr8:102729000-102730600	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr8:102729000-102730800	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr8:102729000-102730800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:102729000-102730800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr8:102729000-102731000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr8:102729000-102731000	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr8:102729000-102731600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:102729200-102730000	Enhancers	H9 Cell Line	embryonic stem cell
42	chr8:102729200-102730200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr8:102729200-102730200	Enhancers	Fetal Brain Male	brain
44	chr8:102729200-102730800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr8:102729200-102731200	Weak transcription	Liver	Liver
46	chr8:102729200-102733400	Weak transcription	Colon Smooth Muscle	Colon
47	chr8:102729200-102733800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr8:102729200-102734200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr8:102729400-102729600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr8:102729400-102729800	Weak transcription	Ovary	ovary

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