Variant report

Variant	rs28560062
Chromosome Location	chr8:102713240-102713241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102703417..102705716-chr8:102712935..102714769,2	MCF-7	breast:
2	chr8:102704561..102708348-chr8:102712896..102716376,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104490	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10107483	0.82[EUR][1000 genomes]
rs10108888	0.87[EUR][1000 genomes]
rs1080598	0.88[EUR][1000 genomes]
rs28429768	0.82[EUR][1000 genomes]
rs28564461	0.83[EUR][1000 genomes]
rs4734582	0.80[EUR][1000 genomes]
rs72674296	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7816488	0.91[EUR][1000 genomes]
rs7816613	0.90[EUR][1000 genomes]
rs7821322	0.81[EUR][1000 genomes]
rs7821561	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102699600-102714800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr8:102700000-102730600	Weak transcription	Aorta	Aorta
3	chr8:102702000-102715600	Weak transcription	Pancreas	Pancrea
4	chr8:102705600-102715800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:102708800-102729000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:102712400-102713600	Enhancers	Right Ventricle	heart
7	chr8:102712400-102714000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:102712400-102714000	Enhancers	Thymus	Thymus
9	chr8:102712400-102716400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:102712600-102713400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:102712600-102713600	Enhancers	Brain Hippocampus Middle	brain
12	chr8:102712600-102713800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:102712600-102713800	Enhancers	Fetal Muscle Trunk	muscle
14	chr8:102712600-102713800	Enhancers	Placenta	Placenta
15	chr8:102712600-102713800	Enhancers	Fetal Stomach	stomach
16	chr8:102712600-102714000	Enhancers	Ovary	ovary
17	chr8:102712600-102714200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:102712600-102714200	Enhancers	Colon Smooth Muscle	Colon
19	chr8:102712600-102714200	Enhancers	Fetal Kidney	kidney
20	chr8:102712600-102714400	Enhancers	Primary hematopoietic stem cells	blood
21	chr8:102712600-102714800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:102712600-102714800	Enhancers	Fetal Thymus	thymus
23	chr8:102712600-102714800	Enhancers	Spleen	Spleen
24	chr8:102712600-102716600	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr8:102712800-102713400	Weak transcription	Liver	Liver
26	chr8:102712800-102714000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:102712800-102714000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:102712800-102714000	Enhancers	Adipose Nuclei	Adipose
29	chr8:102712800-102714000	Flanking Active TSS	GM12878-XiMat	blood
30	chr8:102712800-102714000	Enhancers	NHDF-Ad	bronchial
31	chr8:102712800-102714600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:102713000-102713400	Enhancers	Lung	lung
33	chr8:102713000-102713400	Enhancers	Psoas Muscle	Psoas
34	chr8:102713000-102713400	Enhancers	Right Atrium	heart
35	chr8:102713000-102713600	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr8:102713000-102713800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr8:102713000-102713800	Enhancers	Fetal Heart	heart
38	chr8:102713000-102713800	Enhancers	Left Ventricle	heart
39	chr8:102713000-102713800	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr8:102713000-102713800	Bivalent Enhancer	HSMMtube	muscle
41	chr8:102713000-102714000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr8:102713000-102714000	Enhancers	Fetal Muscle Leg	muscle
43	chr8:102713000-102714200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr8:102713000-102714200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:102713000-102714200	Enhancers	Duodenum Mucosa	Duodenum
46	chr8:102713000-102714400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr8:102713000-102715600	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr8:102713000-102716400	Enhancers	Placenta Amnion	Placenta Amnion
49	chr8:102713200-102713400	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr8:102713200-102713400	Bivalent Enhancer	Fetal Intestine Small	intestine

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