Variant report

Variant	rs16868197
Chromosome Location	chr8:102682851-102682852
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102676339..102678674-chr8:102680968..102682901,3	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10093301	0.87[EUR][1000 genomes]
rs10099482	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099649	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101770	0.85[EUR][1000 genomes]
rs10106317	0.85[EUR][1000 genomes]
rs10107483	0.87[CEU][hapmap]
rs10111577	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111904	0.89[EUR][1000 genomes]
rs16868132	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16868133	0.85[EUR][1000 genomes]
rs16868134	0.85[EUR][1000 genomes]
rs16868139	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868159	0.83[EUR][1000 genomes]
rs16868178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868196	0.90[EUR][1000 genomes]
rs2275994	0.88[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs28469577	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3939935	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734564	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4734582	0.88[CEU][hapmap]
rs6996060	0.85[EUR][1000 genomes]
rs7816488	0.87[CEU][hapmap]
rs7816613	0.87[CEU][hapmap]
rs7821322	0.87[CEU][hapmap]
rs7821561	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
2	chr8:102678800-102683800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:102679800-102683200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr8:102679800-102683800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr8:102680000-102698000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr8:102680200-102683400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:102680600-102683400	ZNF genes & repeats	Fetal Intestine Small	intestine
8	chr8:102680800-102683000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr8:102681200-102683200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:102682200-102683200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:102682200-102683200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr8:102682200-102683200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:102682200-102683200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:102682400-102683000	ZNF genes & repeats	Placenta	Placenta
15	chr8:102682400-102683200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:102682400-102683200	ZNF genes & repeats	Gastric	stomach
17	chr8:102682400-102684200	ZNF genes & repeats	Fetal Muscle Leg	muscle
18	chr8:102682600-102683000	ZNF genes & repeats	Fetal Intestine Large	intestine
19	chr8:102682600-102683200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr8:102682600-102683200	ZNF genes & repeats	Lung	lung
21	chr8:102682800-102683000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:102682800-102683000	ZNF genes & repeats	Pancreas	Pancrea
23	chr8:102682800-102683200	ZNF genes & repeats	Aorta	Aorta
24	chr8:102682800-102683200	ZNF genes & repeats	Fetal Lung	lung

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