Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10093301	0.85[EUR][1000 genomes]
rs10099482	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099649	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10101770	0.85[EUR][1000 genomes]
rs10106317	0.85[EUR][1000 genomes]
rs10111577	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10111904	0.87[EUR][1000 genomes]
rs16868132	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16868133	0.85[EUR][1000 genomes]
rs16868134	0.85[EUR][1000 genomes]
rs16868139	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16868159	0.81[EUR][1000 genomes]
rs16868178	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16868196	0.88[EUR][1000 genomes]
rs16868197	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275994	0.84[EUR][1000 genomes]
rs2387626	1.00[CEU][hapmap]
rs28469577	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4734564	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996060	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3401576	chr8:102640273-102724495	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv981888	chr8:102683092-102690020	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102670800-102699000	Weak transcription	Right Ventricle	heart
2	chr8:102678800-102683800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:102679800-102683800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr8:102680000-102698000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr8:102680200-102683400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:102680600-102683400	ZNF genes & repeats	Fetal Intestine Small	intestine
7	chr8:102682400-102684200	ZNF genes & repeats	Fetal Muscle Leg	muscle
8	chr8:102683000-102683800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
9	chr8:102683200-102702000	Weak transcription	Fetal Lung	lung

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